View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3557_low_4 (Length: 240)
Name: NF3557_low_4
Description: NF3557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3557_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 148; Significance: 3e-78; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 44371708 - 44371531
Alignment:
| Q |
1 |
aatgataataatgacctttcttctgatttcgaggtatcttataattgttgccttaatttcattgttcatttcctgtttcatttgtctgaatcattcattt |
100 |
Q |
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|||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44371708 |
aatgatgataatgacctttcttctgatttcgaggtttcttataattgttgccttaatttcattgttcatttcctgtttcatttgtctgaatcattcattt |
44371609 |
T |
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| Q |
101 |
gtttgtttaggatgagaatgtacaatctgatgat---gacggcggtgacgattttattggtaaaaagaggaaggaaat |
175 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |
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| T |
44371608 |
gtttgtttaggatgagaatgtacaatctgatgatgacgacggcggctacgattttattggtaaaaagaggaaggaaat |
44371531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 44380563 - 44380386
Alignment:
| Q |
1 |
aatgataataatgacctttcttctgatttcgaggtatcttataattgttgccttaatttcattgttcatttcctgtttcatttgtctgaatcattcattt |
100 |
Q |
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|||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44380563 |
aatgatgataatgacctttcttctgatttcgaggtttcttataattgttgccttaatttcattgttcatttcctgtttcatttgtctgaatcattcattt |
44380464 |
T |
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| Q |
101 |
gtttgtttaggatgagaatgtacaatctgatgat---gacggcggtgacgattttattggtaaaaagaggaaggaaat |
175 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |
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| T |
44380463 |
gtttgtttaggatgagaatgtacaatctgatgatgacgacggcggctacgattttattggtaaaaagaggaaggaaat |
44380386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 80 - 140
Target Start/End: Complemental strand, 52930163 - 52930107
Alignment:
| Q |
80 |
atttgtctgaatcattcatttgtttgtttaggatgagaatgtacaatctgatgatgacggc |
140 |
Q |
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||||||||||||| |||||||||||| |||||| ||||||||||||||||||||||||| |
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| T |
52930163 |
atttgtctgaatc---catttgtttgtt-aggatgtgaatgtacaatctgatgatgacggc |
52930107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 52930250 - 52930209
Alignment:
| Q |
1 |
aatgataataatgacctttcttctgatttcgaggtatcttat |
42 |
Q |
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||||||||||| ||||||||||||||||| ||||||| |||| |
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| T |
52930250 |
aatgataataacgacctttcttctgattttgaggtatgttat |
52930209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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