View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3558_high_2 (Length: 206)
Name: NF3558_high_2
Description: NF3558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3558_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 168; Significance: 3e-90; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 10 - 190
Target Start/End: Original strand, 34711974 - 34712156
Alignment:
| Q |
10 |
atcatcacaatgtcatggcaaacattattaggcaacctgcatacta--gagaaaatagaagcatcaaaatttgtagctgaagcaaaagccaaccagaagc |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
34711974 |
atcatcacaatgtcatggcaaacattattaggcaacctgcatactaaagagaaaatagaagcatcaaaatttgtagctgaagcaaaaggcaaccagaagc |
34712073 |
T |
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| Q |
108 |
aaaaggcaacctgcataatctctgactacgtcccacaaacctgctgccctccacactttcttcccctcttcgcagccaaaaaa |
190 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34712074 |
aaaaggcaacctgcataatctctgactacgtcccacaaacctgctgccctccacactttcttcccctcttcgcagccaaaaaa |
34712156 |
T |
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