View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3558_low_1 (Length: 565)
Name: NF3558_low_1
Description: NF3558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3558_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-137; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 12 - 283
Target Start/End: Original strand, 46086476 - 46086747
Alignment:
| Q |
12 |
atgaagggaaaatgctcaattacaattcacacgtcgaataaatatatagcataagtttctcaaataagtttttcgtaatcataaggcttacataacaaaa |
111 |
Q |
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| T |
46086476 |
atgaggggaaaatgctcaattacaattcacacgtagaataaatatatagcataagtttctcaaataagtttttcgcaatcataaggcttacgtaacaaaa |
46086575 |
T |
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| Q |
112 |
aatccaagaaatgaaaattatacctgaccataagcgagaaccgtggcattatatccattgaaaagtgcatcaacgagcggtgctacacaatcattgtaaa |
211 |
Q |
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| T |
46086576 |
aatccaagaaatgaaaattatacctgaccataagcgagaaccgtggcattatatccattgaaaagtgcatcaacgagcggtgctacacaatcatcgtaaa |
46086675 |
T |
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| Q |
212 |
tcgtagatgaaggttgtcccgtgctaccatacacataatcatacgtaaaggaatgagatccaatttgcacct |
283 |
Q |
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| T |
46086676 |
tagtagatgaaggttgtcccgtgctaccatacacataatcatacgtaaaggaatgagatccaatttgcacct |
46086747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 359 - 548
Target Start/End: Original strand, 46086822 - 46087011
Alignment:
| Q |
359 |
gtagcacctgaggttcgccaggaacaacagaaatgcaatctgtgcaaccaaggagaagttcggacgtgatcagaggccgaatgttaacggcaactcgcac |
458 |
Q |
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| T |
46086822 |
gtagcacctgaggttcgccaggaacaacagaaatgcaatctgtgcaaccaaggagaagttcggacgtgatcagaggccgaatgttgacggcaactcgcac |
46086921 |
T |
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| Q |
459 |
gctttgtgtggaatctgtgttctccatttcaagctaacatggaaaacctaaaccccgaattgaatgcaaaaatcaatgcagcattggatt |
548 |
Q |
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| T |
46086922 |
gctctgtgtggaatctgtgttctccatttcaagctaacatggaaaacctaaaccccgaattgaatgcaaaaatcaatgcagcattggatt |
46087011 |
T |
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