View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3559_high_1 (Length: 555)
Name: NF3559_high_1
Description: NF3559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3559_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-134; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 295 - 549
Target Start/End: Original strand, 31407577 - 31407831
Alignment:
| Q |
295 |
attgtataataattatgagataaggggaaaatataagaattttataaaggtcctctaaggctgttagttaaagagaggaataagtctgaaaaactgttta |
394 |
Q |
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| T |
31407577 |
attgtataataattatgagataaggggaaaatataagaattttataaaggtcctctaaggctgtcagttaaatagaggaataagtctgaaaaactgttta |
31407676 |
T |
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| Q |
395 |
gaagctaagtacctgctccaggaaagagacaaattccttcccatttaaagtcttcccttgtacaatctttggagagattatactggtaacaagctctttc |
494 |
Q |
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| T |
31407677 |
gaagctaagtacctgctccaggaaagagacaaattccttcccatttaaagtcttcccttgtacaatctttggagagattatactggtaacaagctctttc |
31407776 |
T |
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| Q |
495 |
aactgctcccttctcgtaacatataactgatcgagttctacatcgttcatctcac |
549 |
Q |
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| T |
31407777 |
aactgctcccttctcgtaacatataactgatcgagttctacatcgttcatatcac |
31407831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 31407463 - 31407535
Alignment:
| Q |
1 |
cctccacaagagagcctgatgatggaatttctcctttgttcaaggcgtcaagtatctacatttaaaatgtcaa |
73 |
Q |
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| T |
31407463 |
cctccacaagagagcctgatgatggaatttctcctttgttcaaggcgtcaagtatctacatttaaaatgtcaa |
31407535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 401 - 506
Target Start/End: Complemental strand, 38493163 - 38493058
Alignment:
| Q |
401 |
aagtacctgctccaggaaagagacaaattccttcccatttaaagtcttcccttgtacaatctttggagagattatactggtaacaagctctttcaactgc |
500 |
Q |
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| T |
38493163 |
aagtacctgcttcaggaaggaaacaaactctttcccatttagagattttccttgtacaatctttggacggattatactagaaacaagctcttttagcttc |
38493064 |
T |
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| Q |
501 |
tccctt |
506 |
Q |
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|||||| |
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| T |
38493063 |
tccctt |
38493058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 2 - 58
Target Start/End: Complemental strand, 38494627 - 38494571
Alignment:
| Q |
2 |
ctccacaagagagcctgatgatggaatttctcctttgttcaaggcgtcaagtatcta |
58 |
Q |
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|||||||||||| |||| ||||||||| ||||| ||||||||||| ||||||||||| |
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| T |
38494627 |
ctccacaagagaacctgttgatggaatctctcccttgttcaaggcttcaagtatcta |
38494571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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