View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3559_high_12 (Length: 338)
Name: NF3559_high_12
Description: NF3559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3559_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 322
Target Start/End: Original strand, 29825183 - 29825504
Alignment:
| Q |
1 |
atcaccgtgcatatgacgatgaccctaaagagagccatcgtgatagatgtgaaattagttatgtttcttgccatgactcccttggtgacaactcatgcct |
100 |
Q |
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| T |
29825183 |
atcaccgtgcatatgacgatgaccctaaagagagccatcgtgatagatgtgaaattagttatgtttcttgccatgactcccttggtgacaactcatgcct |
29825282 |
T |
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| Q |
101 |
ggtcttgaggataccgaagcaggaaaataattgcaaatggtgccatatgaagcatcaacagaaagtgagagaccagttgatgctacaagcctacaactga |
200 |
Q |
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| T |
29825283 |
agtcttgaggatactgaagcaggaaaataattgcaaatggtgccatatgaagcatcaacagaaagtgagagaccagttgatgctacaagcctacaactga |
29825382 |
T |
|
| Q |
201 |
aaatttcaaatgatgcggtgcaacaaaacttagctttaatacttgttggggggatgttagtgttgctcctagctgtgaaaaagatgaaggacttgatagt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29825383 |
aaatttcaaatgatgcggtgcaacaaaacttagctttaatactagttggggggatgttagtgttgctcctagctgtgaaaaagatgaaggacttgatagt |
29825482 |
T |
|
| Q |
301 |
ggtttcactcttgtaacaaatg |
322 |
Q |
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|||||||||||||||||||||| |
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| T |
29825483 |
ggtttcactcttgtaacaaatg |
29825504 |
T |
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