View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3559_high_14 (Length: 321)

Name: NF3559_high_14
Description: NF3559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3559_high_14
NF3559_high_14
[»] chr1 (1 HSPs)
chr1 (9-304)||(8181272-8181567)


Alignment Details
Target: chr1 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 9 - 304
Target Start/End: Complemental strand, 8181567 - 8181272
Alignment:
Q  9 agcacagaataacagcccatatgtaaaaccaactccaacaccttttgcaaaaccactcttctttccaagcttcaaagccttatcaagcgactttgagtat 108  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8181567 agcacagaataacagcccatatgtaaaaccgactccaacaccttttgcaaaaccactcttctttccaagcttcaaagccttatcaagcgactttgagtat 8181468  T
Q  109 gaaccaacagctttttcttctcctgcaaatgagtaaactgtacgcactcgagaaattacttcttcagcaactttttctgcttcagcataagctgctttgc 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8181467 gaaccaacagctttttcttctcctgcaaatgagtaaactgtacgcactcgagaaattacttcttcagcaactttttctgcttcagcataagctgctttgc 8181368  T
Q  209 ctttttccgataaagtagatataatagttaagtaagttcggcctgctatagctatgaatggaacaacagccaaggtgagtagtgtcagctgccata 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8181367 ctttttccgataaagtagatataatagttaagtaagttcggcctgctatagctatgaatggaacaacagccaaggtgagtagtgtcagctgccata 8181272  T

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