View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3559_high_3 (Length: 533)
Name: NF3559_high_3
Description: NF3559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3559_high_3 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 438; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 10 - 533
Target Start/End: Original strand, 50392418 - 50392930
Alignment:
| Q |
10 |
aatatggtggtaagcccctttaattctacagtatggaagtcaaactttttcattctcagtatgcttttatcatgtcgttgagttcatatgattgctcatt |
109 |
Q |
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| T |
50392418 |
aatatggtggtaagctcctttaattctacagtatggaagtcaaactttttaattctcagtatgcttttatcatgtcgttgagttcatatgattgctcatt |
50392517 |
T |
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| Q |
110 |
atggacacactgctcttttcatattactacttttagttttattcatgcnnnnnnngcaaccttttgtaaatgtgatgttggaggtattcctgatcatcag |
209 |
Q |
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| T |
50392518 |
atggacacactgctcttttcatattactacttttaattttattcctgcttttat-gcaaccttttgtaaatgtgatgttggaggtattcct---catcag |
50392613 |
T |
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| Q |
210 |
cagcagttgagttaataaattactaattaaattttttgtttatcaaattttgttggtttcaaacacaacttgtatccatgacaatcttgttgactaaaag |
309 |
Q |
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| T |
50392614 |
cagcagttgagttaataaattactaattaaattttttatttatcaaattttgttggtttcaaacacaacttgtatccatgacaatcttgttgactaaaag |
50392713 |
T |
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| Q |
310 |
atatatgtataagagatagaactcatgattaatttatcctattgtttgctgactcatcaaaataaaagaaattgatagcaattttaatttctgtctccat |
409 |
Q |
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| T |
50392714 |
atatatgtataagagatagaactcatgattaatttatcctattgtttgctgactcatcaaaataaaagaaattgatagcaattttaatttctgtctccat |
50392813 |
T |
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| Q |
410 |
ctctctctatttaattgaacatacctcatttataacagcagttcacagctgcagagctactgctaaaactaaaactaagtagtaagcagtaagcaccaac |
509 |
Q |
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| T |
50392814 |
ctctctctatttaattgaacatacctcatttataacagcagttcacagctgcagagctactgctaaaactaaaactaagt-------agtaagcaccaac |
50392906 |
T |
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| Q |
510 |
aatatggcggttggtaattccatt |
533 |
Q |
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| T |
50392907 |
aatatggcggttggtaattccatt |
50392930 |
T |
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