View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3559_high_5 (Length: 473)
Name: NF3559_high_5
Description: NF3559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3559_high_5 |
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| [»] scaffold0123 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-113; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 239 - 466
Target Start/End: Original strand, 28507081 - 28507308
Alignment:
| Q |
239 |
ccatctctctcatctctaggcactgagtaccccatcttcttttcctccaacactcttgcatttattccttgatctgcaagatacgtcaacaacacaagtg |
338 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
28507081 |
ccatctctctcatctctaggcactgagtaccccatcttcttttcctccaacactcttgcatttattccttgatctgaaagatacgtcaacaacacaagtg |
28507180 |
T |
|
| Q |
339 |
gcttctcattctgaacggcctctaccaccgatgtccaccctgcatgagtcaagaatccaccaactgctatgtgacctaatatcttcatttgtgggaccca |
438 |
Q |
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||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
28507181 |
gcttctcatgttgaactgcctctaccaccgatgtccaccctgcatgagtcaagaatccaccaactgccatgtgacctaatatcttcatttgtgggaccca |
28507280 |
T |
|
| Q |
439 |
atcagtgcataccactccacgtcctttg |
466 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
28507281 |
atcagtgcataccactccacgtcctttg |
28507308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 239 - 466
Target Start/End: Original strand, 28494535 - 28494762
Alignment:
| Q |
239 |
ccatctctctcatctctaggcactgagtaccccatcttcttttcctccaacactcttgcatttattccttgatctgcaagatacgtcaacaacacaagtg |
338 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||| |||| ||||||||||||| |
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| T |
28494535 |
ccatctctctcatctctaggcactgagtatcccatcttcttttcttccaacattcttgcatttattccttgatctgcaagacacgttaacaacacaagtg |
28494634 |
T |
|
| Q |
339 |
gcttctcattctgaacggcctctaccaccgatgtccaccctgcatgagtcaagaatccaccaactgctatgtgacctaatatcttcatttgtgggaccca |
438 |
Q |
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||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||| | ||| | ||||||||||||||||||| |||| |
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| T |
28494635 |
gcttctcatgttgaactgcttctaccaccgatgtccaccctgcatgagtcaagaatccaccaactgccacgtggcttaatatcttcatttgtggggccca |
28494734 |
T |
|
| Q |
439 |
atcagtgcataccactccacgtcctttg |
466 |
Q |
| |
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||||||||||||||||||||| ||||| |
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| T |
28494735 |
ttcagtgcataccactccacgtactttg |
28494762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 101 - 229
Target Start/End: Complemental strand, 28503220 - 28503092
Alignment:
| Q |
101 |
aatacactaaaaaattacaaaactaaaactatatcaagccaaacctattcataaacaaaagcacgctacttgaaagattagcaccttgatatatgaatgg |
200 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |
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| T |
28503220 |
aatacactaaacaattacaaaactaaaactatatcaagccaaacctattcataaacaaaagcacactacttgaaagattaacaccttgatatatgaatgg |
28503121 |
T |
|
| Q |
201 |
attattgacaaattaattgccaagattaa |
229 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
28503120 |
attattgacaaattaattgccaagattaa |
28503092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 101 - 229
Target Start/End: Complemental strand, 28510778 - 28510650
Alignment:
| Q |
101 |
aatacactaaaaaattacaaaactaaaactatatcaagccaaacctattcataaacaaaagcacgctacttgaaagattagcaccttgatatatgaatgg |
200 |
Q |
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|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |
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| T |
28510778 |
aatacactaaacaattacaaaactaaaactatatcaagccaaacctattcataaacaaaagcacactacttgaaagattaacaccttgatatatgaatgg |
28510679 |
T |
|
| Q |
201 |
attattgacaaattaattgccaagattaa |
229 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
28510678 |
attattgacaaattaattgccaagattaa |
28510650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 28506518 - 28506414
Alignment:
| Q |
1 |
tgcacatgtttcgaatgataagagataaacaatgcaataataccaatttaatatgattaagaaatccaactataaattgtattatgattaatcaaacttc |
100 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| | |||||||||||||||||| |
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| T |
28506518 |
tgcacacgtttcgaatgataagagataaacaatgcaataataacaattcaatatgattaagaaatccaactataaattggactatgattaatcaaacttc |
28506419 |
T |
|
| Q |
101 |
aatac |
105 |
Q |
| |
|
||||| |
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|
| T |
28506418 |
aatac |
28506414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 247 - 466
Target Start/End: Original strand, 28491224 - 28491443
Alignment:
| Q |
247 |
ctcatctctaggcactgagtaccccatcttcttttcctccaacactcttgcatttattccttgatctgcaagatacgtcaacaacacaagtggcttctca |
346 |
Q |
| |
|
||||||||||||||| | ||| ||||||||||||| |||||||| | ||||||||||| || ||| ||||| | |||| |||||||||||||||||| |
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| T |
28491224 |
ctcatctctaggcaccgtgtatgccatcttcttttcttccaacaccttcgcatttattccctggtctacaagaaatgtcatcaacacaagtggcttctcg |
28491323 |
T |
|
| Q |
347 |
ttctgaacggcctctaccaccgatgtccaccctgcatgagtcaagaatccaccaactgctatgtgacctaatatcttcatttgtgggacccaatcagtgc |
446 |
Q |
| |
|
|| ||||| || || ||||| |||||||| ||||| |||| ||||| |||||| ||| ||||| ||||||||||||||||| || |||||||||||| |
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| T |
28491324 |
ttttgaactgcttccaccactgatgtccaacctgcgtgagaaaagaacacaccaattgccatgtgccctaatatcttcatttgcggagcccaatcagtgc |
28491423 |
T |
|
| Q |
447 |
ataccactccacgtcctttg |
466 |
Q |
| |
|
|||| ||||| || |||||| |
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| T |
28491424 |
atacaactccgcgccctttg |
28491443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 75 - 180
Target Start/End: Original strand, 13798389 - 13798495
Alignment:
| Q |
75 |
aattgtattatgattaatcaaacttcaatacactaaaaaatt-acaaaactaaaactatatcaagccaaacctattcataaacaaaagcacgctacttga |
173 |
Q |
| |
|
|||||| ||||||||||||||| ||||||||| |||| |||| ||||||||| |||||| ||| |||||||||||| |||||||||| ||| ||||||| |
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|
| T |
13798389 |
aattgttttatgattaatcaaaattcaatacaataaacaatttacaaaactataactatctcatgccaaacctattgataaacaaaaacacactacttgg |
13798488 |
T |
|
| Q |
174 |
aagatta |
180 |
Q |
| |
|
||||||| |
|
|
| T |
13798489 |
aagatta |
13798495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 93; Significance: 4e-45; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 11 - 223
Target Start/End: Original strand, 17795069 - 17795281
Alignment:
| Q |
11 |
tcgaatgataagagataaacaatgcaataataccaatttaatatgattaagaaatccaactataaattgtattatgattaatcaaacttcaatacactaa |
110 |
Q |
| |
|
||||||||||||||||||| |||| ||||||| |||| ||||||| ||||||| ||||||| |||||||||||||||||||||| ||||||||||||| |
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|
| T |
17795069 |
tcgaatgataagagataaataatgtgataatactaattcaatatgaagaagaaattcaactatgaattgtattatgattaatcaaaattcaatacactaa |
17795168 |
T |
|
| Q |
111 |
aaaattacaaaactaaaactatatcaagccaaacctattcataaacaaaagcacgctacttgaaagattagcaccttgatatatgaatggattattgaca |
210 |
Q |
| |
|
||| ||||||||||| |||||| | |||||||| || ||| ||||| ||| || |||||||||||| || ||| ||||||||||| |||||||||| |
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|
| T |
17795169 |
aaatttacaaaactataactatctaaagccaaaaaatttgttaagcaaaaacacacttcttgaaagattaacatctttatatatgaatgaattattgaca |
17795268 |
T |
|
| Q |
211 |
aattaattgccaa |
223 |
Q |
| |
|
||| |||||||| |
|
|
| T |
17795269 |
cattgattgccaa |
17795281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 71; Significance: 6e-32; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 11 - 225
Target Start/End: Complemental strand, 2762510 - 2762294
Alignment:
| Q |
11 |
tcgaatgataagagataaacaat--gcaataataccaatttaatatgattaagaaatccaactataaattgtattatgattaatcaaacttcaatacact |
108 |
Q |
| |
|
||||||||||| || |||||||| |||| |||||||||| ||||||| ||||||| ||||||| ||||||||||||||||||||| |||||| || |
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|
| T |
2762510 |
tcgaatgataaaagctaaacaatatgcaacaataccaattcaatatgaacaagaaattcaactatgaattgtattatgattaatcaagagccaatacgct |
2762411 |
T |
|
| Q |
109 |
aa-aaaattacaaaactaaaactatatcaagccaaacctattcataaacaaaagcacgctacttgaaagattagcaccttgatatatgaatggattattg |
207 |
Q |
| |
|
|| || ||||||||||| |||||| |||| |||||||| | | | |||||||||| | ||| ||| |||| || ||||||||||||||||||||||| |
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|
| T |
2762410 |
aatcaacttacaaaactataactatctcaaaccaaacctgat-aaacacaaaagcacacaactaaaaatattaacaacttgatatatgaatggattattg |
2762312 |
T |
|
| Q |
208 |
acaaattaattgccaaga |
225 |
Q |
| |
|
|||| ||||||||||||| |
|
|
| T |
2762311 |
acaagttaattgccaaga |
2762294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 14 - 157
Target Start/End: Complemental strand, 2758572 - 2758428
Alignment:
| Q |
14 |
aatgataagagataaacaatgcaataataccaatttaatatgattaagaaatccaactataaattgtattatgattaatcaaacttcaatacactaa-aa |
112 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||| ||||||| ||||||| ||||||| ||||||||||||||||||||| |||||||||||| | |
|
|
| T |
2758572 |
aatgataaaagctaaacaatgcaataataccaattcaatatgaacaagaaattcaactatgaattgtattatgattaatcaagagtcaatacactaatca |
2758473 |
T |
|
| Q |
113 |
aattacaaaactaaaactatatcaagccaaacctattcataaaca |
157 |
Q |
| |
|
| |||||||| || |||||| |||| ||||||||||| ||||||| |
|
|
| T |
2758472 |
acttacaaaattataactatctcaaaccaaacctattgataaaca |
2758428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 14 - 95
Target Start/End: Complemental strand, 2768074 - 2767993
Alignment:
| Q |
14 |
aatgataagagataaacaatgcaat-aataccaatttaatatgattaagaaatccaactataaattgtattatgattaatcaa |
95 |
Q |
| |
|
|||||||| |||||||||||||||| |||||||||| ||||| | ||||||| ||| || ||||||||||||||||||||| |
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|
| T |
2768074 |
aatgataaaagataaacaatgcaataaataccaattcaatat-aacaagaaattcaattacgaattgtattatgattaatcaa |
2767993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 44 - 96
Target Start/End: Original strand, 17261968 - 17262020
Alignment:
| Q |
44 |
caatttaatatgattaagaaatccaactataaattgtattatgattaatcaaa |
96 |
Q |
| |
|
||||| ||||| | |||||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
17261968 |
caattcaatataaataagaaatccaactataaattgtaatatgatcaatcaaa |
17262020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0123 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0123
Description:
Target: scaffold0123; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 11 - 110
Target Start/End: Complemental strand, 13053 - 12954
Alignment:
| Q |
11 |
tcgaatgataagagataaacaatgcaataataccaatttaatatgattaagaaatccaactataaattgtattatgattaatcaaacttcaatacactaa |
110 |
Q |
| |
|
||||||||||||||||||| ||| ||||||| |||| ||||||| |||||||| ||||||| |||||||||||||||||||||| ||||||||||||| |
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|
| T |
13053 |
tcgaatgataagagataaatcatgtgataatactaattcaatatgaataagaaattcaactatgaattgtattatgattaatcaaaattcaatacactaa |
12954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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