View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3559_high_6 (Length: 469)
Name: NF3559_high_6
Description: NF3559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3559_high_6 |
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| [»] scaffold0305 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 190 - 450
Target Start/End: Original strand, 37262779 - 37263044
Alignment:
| Q |
190 |
accgtacaaatatcaatagtnnnnnnngttagagatgtctatcctatgtttttctttt-----tacaatctcattacatcagcaccaaacattgttgtac |
284 |
Q |
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| T |
37262779 |
accgtacaaatatcaatagtaaaaaaagttagagatgtctatcctatgttttttttttttttttacaatctcattacatcagcaccaaacattgttgtac |
37262878 |
T |
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| Q |
285 |
aaatataaaaattttgtcatcattgattacatcaccacaaataaaaagtactactactatatatttattacacactgatgaattagaagatgtatgtggt |
384 |
Q |
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| T |
37262879 |
aaatataaaaaatttgtcatcattgattacatcaccacaaataaaaagtactactactatatatttattacacactgatgaattagaagatgtatgtggt |
37262978 |
T |
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| Q |
385 |
gaagaagcagccgcatacactataaacaattcatttataacattccaccaatccaacaagccttaa |
450 |
Q |
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| T |
37262979 |
gaagaagcagccgcatacactataaacaattcatttataacattccaccaatccaacaagccttaa |
37263044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 41 - 170
Target Start/End: Original strand, 37262595 - 37262725
Alignment:
| Q |
41 |
atgcaaaaaatttaaggagcaaggatgttaagaggtcgatatgtatcttagacggaatcgagggaagtacattgacgagaagacaacttggtttaaagac |
140 |
Q |
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| T |
37262595 |
atgcaaaaattttaaggagcaaggatgttaaggggtcgatatgtatcttagaggggatcgaggggagtacattgacgagaagacaacttagtttaaagac |
37262694 |
T |
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| Q |
141 |
ctcctacaact-caacaagagggaagcaata |
170 |
Q |
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| T |
37262695 |
ctcctacaaatccaacgagatggaagcaata |
37262725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 19 - 168
Target Start/End: Original strand, 37871786 - 37871937
Alignment:
| Q |
19 |
gggagcagtaaaatgcaatgt-gatgcaaaaaattt-aaggagcaaggatgttaagaggtcgatatgtatcttagacggaatcgagggaagtacattgac |
116 |
Q |
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| T |
37871786 |
gggagcagtaaaatgccatgttgatgcggcaaatttcaaggagcaagtatgttatggggtcagcatgtgtcttagaggggatcaaggggagtacattagg |
37871885 |
T |
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| Q |
117 |
gagaagacaacttggtttaaagacctcctacaactcaacaagagggaagcaa |
168 |
Q |
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| T |
37871886 |
gagaagaaatcttggtttaaaggcctcccacaacccaacaaggtggaagcaa |
37871937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0305 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0305
Description:
Target: scaffold0305; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 138
Target Start/End: Complemental strand, 19013 - 18893
Alignment:
| Q |
20 |
ggagcagtaaaatgcaatgt-gatgcaaaaaatttaaggagcaaggatgttaagaggtcgatatgtatcttagacggaatcgagggaagtacattgac-g |
117 |
Q |
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| T |
19013 |
ggagcagtaaaatggaatgtcgatacaacaattttaaggagtaaggatgttgttgggtcgacatgtgtcttagaggggatcaaggggagtacattgggag |
18914 |
T |
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| Q |
118 |
agaagacaacttggtttaaag |
138 |
Q |
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| T |
18913 |
cgaagacaacttggtttaaag |
18893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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