View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3559_low_10 (Length: 427)

Name: NF3559_low_10
Description: NF3559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3559_low_10
NF3559_low_10
[»] chr5 (3 HSPs)
chr5 (17-416)||(9712186-9712585)
chr5 (94-161)||(9724346-9724413)
chr5 (253-317)||(16127056-16127120)
[»] chr7 (2 HSPs)
chr7 (330-380)||(36909607-36909657)
chr7 (264-317)||(6824305-6824358)
[»] chr8 (2 HSPs)
chr8 (138-206)||(31106371-31106440)
chr8 (330-370)||(6020663-6020703)
[»] scaffold0316 (1 HSPs)
scaffold0316 (331-374)||(16023-16066)
[»] chr4 (2 HSPs)
chr4 (267-317)||(4161642-4161692)
chr4 (280-317)||(971878-971915)
[»] chr6 (1 HSPs)
chr6 (330-399)||(2782983-2783052)
[»] chr2 (2 HSPs)
chr2 (355-396)||(37561553-37561594)
chr2 (253-317)||(17220847-17220911)


Alignment Details
Target: chr5 (Bit Score: 388; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 17 - 416
Target Start/End: Original strand, 9712186 - 9712585
Alignment:
Q  17 agatttaattgtaacaagtgaatggagaagggccaaaaaaggccaaaatatgtatcccatctcaccaatagaagcagagaggggtatagtgtaactcatc 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9712186 agatttaattgtaacaagtgaatggagaagggccaaaaaaggccaaaatatgtatcccatctcaccaatagaagcagagaggggtatagtgtaactcatc 9712285  T
Q  117 cgtaccacatgcaaattttgatcaagcttcaaaactgaaatattaccagtagaaactccaatatacctgccaagcagatacatgttcataacctttgatg 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9712286 cgtaccacatgcaaattttgatcaagcttcaaaactgaaatattaccagtagaaactccaatatacctgccaagcagatacatgttcataacctttgatg 9712385  T
Q  217 ctccttaaaaatgtaatttctcaatggagtaaacaatcattttggaccttaaatgtgtgatgtgttgtcacaatagtctttgaatgtatcaaaatttcaa 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  9712386 ctccttaaaaatgtaatttctcaatggagtaaacaatcattttggaccttacatgtgtgatgtgttgtcacaatagtctttgaatgtatcaaaatttcaa 9712485  T
Q  317 agtactcacggcgccatgattttgttgaagctctagaatgtagcttttgccaaaatcatggtggcttgccgtgattccgctaaacttaccgccaattcat 416  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  9712486 agtactcacggcgccatgattttgttgaagctctaaaatgtagcttttgccaaaaccatggtggcttgccgtgattccgctaaacttaccgccaattcat 9712585  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 94 - 161
Target Start/End: Original strand, 9724346 - 9724413
Alignment:
Q  94 agaggggtatagtgtaactcatccgtaccacatgcaaattttgatcaagcttcaaaactgaaatatta 161  Q
    |||||||||| |||||| ||| |  |||||| ||||||||||||||||||||||||||||||||||||    
T  9724346 agaggggtatggtgtaattcaactttaccacgtgcaaattttgatcaagcttcaaaactgaaatatta 9724413  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 253 - 317
Target Start/End: Original strand, 16127056 - 16127120
Alignment:
Q  253 tcattttggaccttaaatgtgtgatgtgttgtcacaatagtctttgaatgtatcaaaatttcaaa 317  Q
    ||||||||| || ||||||||| | | || ||||||||||||| | || ||||||||||||||||    
T  16127056 tcattttggtccctaaatgtgtaaggagtagtcacaatagtctctcaaagtatcaaaatttcaaa 16127120  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 330 - 380
Target Start/End: Complemental strand, 36909657 - 36909607
Alignment:
Q  330 ccatgattttgttgaagctctagaatgtagcttttgccaaaatcatggtgg 380  Q
    ||||||||||||| |||||||||| ||||||| ||| ||||||||||||||    
T  36909657 ccatgattttgttaaagctctagagtgtagctcttgtcaaaatcatggtgg 36909607  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 317
Target Start/End: Original strand, 6824305 - 6824358
Alignment:
Q  264 cttaaatgtgtgatgtgttgtcacaatagtctttgaatgtatcaaaatttcaaa 317  Q
    ||||||||||||||||||| || | ||| |||||| ||||||||||||| ||||    
T  6824305 cttaaatgtgtgatgtgttttcgctataatctttgcatgtatcaaaattacaaa 6824358  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 138 - 206
Target Start/End: Complemental strand, 31106440 - 31106371
Alignment:
Q  138 tcaagcttcaaaactgaaatattaccagtagaaactccaatatacctgccaa-gcagatacatgttcata 206  Q
    ||||||||||||||||| ||||||||| |||||  ||||||||||||  |||  ||||||||||||||||    
T  31106440 tcaagcttcaaaactgatatattaccattagaatgtccaatatacctatcaacacagatacatgttcata 31106371  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 330 - 370
Target Start/End: Original strand, 6020663 - 6020703
Alignment:
Q  330 ccatgattttgttgaagctctagaatgtagcttttgccaaa 370  Q
    |||||||||||||||||||||| | ||||| ||||||||||    
T  6020663 ccatgattttgttgaagctctaaagtgtagtttttgccaaa 6020703  T

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Target: scaffold0316 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 331 - 374
Target Start/End: Original strand, 16023 - 16066
Alignment:
Q  331 catgattttgttgaagctctagaatgtagcttttgccaaaatca 374  Q
    |||||||||||||||| || | ||||||||||||||||||||||    
T  16023 catgattttgttgaagttccaaaatgtagcttttgccaaaatca 16066  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 317
Target Start/End: Original strand, 4161642 - 4161692
Alignment:
Q  267 aaatgtgtgatgtgttgtcacaatagtctttgaatgtatcaaaatttcaaa 317  Q
    |||||||| ||| || |||||||||||| || |||||||||||||||||||    
T  4161642 aaatgtgtaatgagtagtcacaatagtccttcaatgtatcaaaatttcaaa 4161692  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 317
Target Start/End: Original strand, 971878 - 971915
Alignment:
Q  280 gttgtcacaatagtctttgaatgtatcaaaatttcaaa 317  Q
    ||||||||||||||| || |||||||||||||||||||    
T  971878 gttgtcacaatagtcattcaatgtatcaaaatttcaaa 971915  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 330 - 399
Target Start/End: Complemental strand, 2783052 - 2782983
Alignment:
Q  330 ccatgattttgttgaagctctagaatgtagcttttgccaaaatcatggtggcttgccgtgattccgctaa 399  Q
    |||||||||||||||||||| | | || ||||||   ||||||||| |||||| ||||||||||| ||||    
T  2783052 ccatgattttgttgaagctccaaagtgcagctttcaacaaaatcatagtggctcgccgtgattccactaa 2782983  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 355 - 396
Target Start/End: Complemental strand, 37561594 - 37561553
Alignment:
Q  355 tgtagcttttgccaaaatcatggtggcttgccgtgattccgc 396  Q
    ||||||||||| ||||||||||||||||  ||||||||||||    
T  37561594 tgtagcttttggcaaaatcatggtggctcaccgtgattccgc 37561553  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 253 - 317
Target Start/End: Complemental strand, 17220911 - 17220847
Alignment:
Q  253 tcattttggaccttaaatgtgtgatgtgttgtcacaatagtctttgaatgtatcaaaatttcaaa 317  Q
    ||||||||| |||||||||| ||| ||  |||||||||||||  | |||||||||||||| ||||    
T  17220911 tcattttggtccttaaatgtttgaagtcctgtcacaatagtcgctaaatgtatcaaaattacaaa 17220847  T

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