View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3559_low_12 (Length: 370)
Name: NF3559_low_12
Description: NF3559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3559_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 17 - 363
Target Start/End: Complemental strand, 43055312 - 43054966
Alignment:
| Q |
17 |
agatttaaatatcaatcaagagaggtgttcatatttaatgtccgacaatatttagaatatgattatatttagtcgagggaatttatgcaagaaaaaagta |
116 |
Q |
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| T |
43055312 |
agatttaaatatcaatgaagagaggtgtccatatttaatgtcggacaatatctcgaatatgattacatttagtcgagggaatttatgcaagaaaaaagta |
43055213 |
T |
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| Q |
117 |
atgaagtgttgactgcaaacgtttaaagttgtatctactggagaatattcgaaagaaaatgtttgattgaccaagtagagcacggcaaaatgtgaattgt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43055212 |
atgaagtgttgactgcaaacgtttaaagttgtatctactggagaatattcgagagaaaatgtttgattgaccaagtagagcacggcaaaatgtgaattgt |
43055113 |
T |
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| Q |
217 |
gtttaagaaacttgtgcttcaagcaaaaacttgttaatgactgacatagccgtgaagggttagactgtgtgactaagttaataattccacaagttttccc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43055112 |
gtttaagaaacttgtgcttcaagcaaaaacttgttaatgactgacatagccgtgaagggttagactgtgtgactaagttaataattccacaagttttccc |
43055013 |
T |
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| Q |
317 |
aaactttctcccaacatttcaattgcattctaagattccctttgctt |
363 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43055012 |
aaactttctcccaacatttcaattgcattctaagattccctttgctt |
43054966 |
T |
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