View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3559_low_17 (Length: 263)
Name: NF3559_low_17
Description: NF3559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3559_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 21 - 260
Target Start/End: Complemental strand, 45661446 - 45661207
Alignment:
| Q |
21 |
atcccaaccaaaaaccctaattcaaacccttttagtttcacccaattcaactaattcttttgaatctttgnnnnnnnctttctcacccaaatcgaagttc |
120 |
Q |
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| T |
45661446 |
atcccaaccaaaaaccctaattcgaacccttttagtttcacccaattcaactaattcttttgaacctttgtttttttctttctcacccaaatcgaagttc |
45661347 |
T |
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| Q |
121 |
cgaatttgaaattcatcatccccaaaaaatgggaaatcctcctcgtgaaatcgacgattacatcttcaaacaacgcaagcttcatgaatcccaagaatca |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45661346 |
cgaatttgaaattcatcatccccaaaaaatgggaaatcctcctcgtgaaatcgacgattacatcttcaaacaacgcaagcttcatgaatcccaagaatca |
45661247 |
T |
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| Q |
221 |
caaaaataccttcgtgaacaaaacctttctctgctcctcc |
260 |
Q |
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|||||||||||||||||||||||||||||||| ||||||| |
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| T |
45661246 |
caaaaataccttcgtgaacaaaacctttctcttctcctcc |
45661207 |
T |
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