View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3559_low_2 (Length: 547)
Name: NF3559_low_2
Description: NF3559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3559_low_2 |
 | |
|
| [»] scaffold0067 (2 HSPs) |
| | |
|
| [»] scaffold0248 (1 HSPs) |
| | |
|
| [»] scaffold0763 (1 HSPs) |
| | |
|
| [»] scaffold0380 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0067 (Bit Score: 446; Significance: 0; HSPs: 2)
Name: scaffold0067
Description:
Target: scaffold0067; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 67 - 532
Target Start/End: Original strand, 41797 - 42262
Alignment:
| Q |
67 |
actaaataaacccaattaataagacaatattctaccaaatcccctaactaaaacacgagaaacccattcatactgtgtgagagaaggggcacaacacatt |
166 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41797 |
actaaataaacccaattaataagacaatattctaccaaatcccctaactaaaacacgagaaacccattcatactgtgtgagagaaggggcacaacacatt |
41896 |
T |
|
| Q |
167 |
acacaaagcttcaaatacataaaggcataggtactgagtttattttaagagttctatgttggatttttccctaattaagttatttatttatttaaataaa |
266 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41897 |
acacaaagcttcaaatacataaaggcataggtactgagtttattttaagagttctatgttggatttttccctaattaagttatttatttatttaaataaa |
41996 |
T |
|
| Q |
267 |
taagtggtaattacccactaagtgcacatagtggtaattatccattaatcagaaaattatctttattctttcccttaaatttagtaactgcccgttatga |
366 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41997 |
taagtggtaattacccactaagagcacatagtggtaattatccattaatcagaaaattgtctttattctttcccttaaatttagtaactgcccgttatga |
42096 |
T |
|
| Q |
367 |
gttagtggaggagcagttttattttgcacgttcagtaacttcttgatggcataacttatataaaggagtgcacttcatttgtttaggttccctaagccta |
466 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
42097 |
gttagtggaggagcagttttattttgcactttcagtaacttcttgatggcataagttatataaaggagtgcacttcatttgttttggttccctaagccta |
42196 |
T |
|
| Q |
467 |
acatctctattcagaagacttacaccatcaaagtgagattgtggaaggtttagaagagcctcaact |
532 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42197 |
acatctctattcagaagacttacaccatcaaagtgagattgtggaaggtttagaagagcctcaact |
42262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0067; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 12 - 75
Target Start/End: Original strand, 41324 - 41387
Alignment:
| Q |
12 |
aagaaggaagtggtgaactttgattaagtcaataattgcctacaccaaattataaactaaataa |
75 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
41324 |
aagaaggaagtggtgaactttgattaagtcaataattgcctacaccaaattataaattaaataa |
41387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 250; Significance: 1e-138; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 222 - 532
Target Start/End: Complemental strand, 19154470 - 19154159
Alignment:
| Q |
222 |
atgttggatttttccctaattaagttatttatttat--ttaaataaataagtggtaattacccactaagtgcacatagtggtaattatccattaatcaga |
319 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19154470 |
atgttggatttt-ccctaattaagttatttatttttaattaaataaataagtggtaattacccactaagtgcacatagtggtaattatccattaatcaga |
19154372 |
T |
|
| Q |
320 |
aaattatctttattctttcccttaaatttagtaactgcccgttatgagttagtggaggagcagttttattttgcacgttcagtaacttcttgatggcata |
419 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| | |
|
|
| T |
19154371 |
aaatggtctttattctttcccttaaatttagtaactgcccattatgagtgagtggaggagcagttttgttttgcacgttcagtaacttcttgatggcaga |
19154272 |
T |
|
| Q |
420 |
acttatataaaggagtgcacttcatttgtttaggttccctaagcctaacatctctattcagaagacttacaccatcaaagtgagattgtggaaggtttag |
519 |
Q |
| |
|
| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
19154271 |
agttatataaaggagtgcagttcatttgttttggttccctaagcctaacatctctattcagaagacttacaccatcaaagtgagattgtgaaaggtttag |
19154172 |
T |
|
| Q |
520 |
aagagcctcaact |
532 |
Q |
| |
|
||||||||||||| |
|
|
| T |
19154171 |
aagagcctcaact |
19154159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 221 - 532
Target Start/End: Complemental strand, 19160376 - 19160064
Alignment:
| Q |
221 |
tatgttggatttttccctaattaagttatttatttat--ttaaataaataagtggtaattacccactaagtgcacatagtggtaattatccattaatcag |
318 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19160376 |
tatgttggatttt-ccctaattaagttatttatttttaattaaataaataagtggtaattacccactaagtgcacatagtggtaattatccattaatcag |
19160278 |
T |
|
| Q |
319 |
aaaattatctttattctttcccttaaatttagtaactgcccgttatgagttagtggaggagcagttttattttgcacgttcagtaacttcttgatggcat |
418 |
Q |
| |
|
||||| |||||||||||||||||||||||| ||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
19160277 |
aaaatagtctttattctttcccttaaatttaataactgcccattatgagtgagtggaggagcagttttgttttgcacgttcagtaacttcttgatggcag |
19160178 |
T |
|
| Q |
419 |
aacttatataaaggagtgcacttcatttgtttaggttccctaagcctaacatctctattcagaagacttacaccatcaaagtgagattgtggaaggttta |
518 |
Q |
| |
|
|| ||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
19160177 |
aagttatataaaggagtgcagttcatttgttttggtttcctaagcctaacatctctattcagaagacttacaccatcaaagtgagattgtgaaaggttta |
19160078 |
T |
|
| Q |
519 |
gaagagcctcaact |
532 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
19160077 |
gaagagcctcaact |
19160064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 304 - 532
Target Start/End: Complemental strand, 4253405 - 4253177
Alignment:
| Q |
304 |
ttatccattaatcagaaaattatctttattctttcccttaaatttagtaactgcccgttatgagttagtggaggagcagttttattttgcacgttcagta |
403 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||| |||||||||||||||| |
|
|
| T |
4253405 |
ttatccattaatcagaaaatgttctttattctttcccttaaatttagtaactgtccattatgagtgagtggaggagcagttttgttttgcacgttcagta |
4253306 |
T |
|
| Q |
404 |
acttcttgatggcataacttatataaaggagtgcacttcatttgtttaggttccctaagcctaacatctctattcagaagacttacaccatcaaagtgag |
503 |
Q |
| |
|
|||||||||||||| || ||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4253305 |
acttcttgatggcagaagttatataaaggagtgtagttcatttgttttggttccctaagcctaacatctctattcagaagacttacaccatcaaagtgag |
4253206 |
T |
|
| Q |
504 |
attgtggaaggtttagaagagcctcaact |
532 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
4253205 |
attgtggaaggtttagaagagcctcaact |
4253177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 284 - 532
Target Start/End: Original strand, 11576289 - 11576537
Alignment:
| Q |
284 |
ctaagtgcacatagtggtaattatccattaatcagaaaattatctttattctttcccttaaatttagtaactgcccgttatgagttagtggaggagcagt |
383 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||||| ||||||||| |||||||| |||||||||||||| |
|
|
| T |
11576289 |
ctaagtgcacatagtggtagttatccattaatcagaaaatggtctttattctttctgttaaatttaataactgcccattatgagtgagtggaggagcagt |
11576388 |
T |
|
| Q |
384 |
tttattttgcacgttcagtaacttcttgatggcataacttatataaaggagtgcacttcatttgtttaggttccctaagcctaacatctctattcagaag |
483 |
Q |
| |
|
||| |||||||||| ||||||||||||||||||| || ||||||||||||||| | ||||||| ||| ||||| ||||||||||||||||||||||| || |
|
|
| T |
11576389 |
tttgttttgcacgtccagtaacttcttgatggcagaagttatataaaggagtgtagttcatttattttggttctctaagcctaacatctctattcaggag |
11576488 |
T |
|
| Q |
484 |
acttacaccatcaaagtgagattgtggaaggtttagaagagcctcaact |
532 |
Q |
| |
|
|||| ||||||||||||||||||||| ||| |||||||||||||||||| |
|
|
| T |
11576489 |
acttgcaccatcaaagtgagattgtgaaagctttagaagagcctcaact |
11576537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 223 - 288
Target Start/End: Original strand, 11575554 - 11575619
Alignment:
| Q |
223 |
tgttggatttttccctaattaagttatttatttatttaaataaataagtggtaattacccactaag |
288 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
11575554 |
tgttggatttttccctaattaagttatttatttatttaaataaataagtggtaactacccactaag |
11575619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 245; Significance: 1e-135; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 231 - 532
Target Start/End: Original strand, 18474762 - 18475065
Alignment:
| Q |
231 |
ttttccctaattaagttatttatttat--ttaaataaataagtggtaattacccactaagtgcacatagtggtaattatccattaatcagaaaattatct |
328 |
Q |
| |
|
||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |
|
|
| T |
18474762 |
ttttccctaattaagttatttatttttaattaaataaataagtggtaattacccactaagtgcacatagtggtaattatccattaattagaaaatggtct |
18474861 |
T |
|
| Q |
329 |
ttattctttcccttaaatttagtaactgcccgttatgagttagtggaggagcagttttattttgcacgttcagtaacttcttgatggcataacttatata |
428 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| |||||||||||| |||| |||||||||||||||||||||||||||||| || ||||||| |
|
|
| T |
18474862 |
ttattctttcccttaaatttagtaactgcccattatgagtgagtggaggagcaattttgttttgcacgttcagtaacttcttgatggcagaagttatata |
18474961 |
T |
|
| Q |
429 |
aaggagtgcacttcatttgtttaggttccctaagcctaacatctctattcagaagacttacaccatcaaagtgagattgtggaaggtttagaagagcctc |
528 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18474962 |
aaggagtgcagttcatttgttttggttccctaagcctaacatctctattcagaagacttacaccatcaaagtgagattgtggaaggtttagaagagcctc |
18475061 |
T |
|
| Q |
529 |
aact |
532 |
Q |
| |
|
|||| |
|
|
| T |
18475062 |
aact |
18475065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 222 - 532
Target Start/End: Original strand, 18480696 - 18481007
Alignment:
| Q |
222 |
atgttggatttttccctaattaagttatttatttat--ttaaataaataagtggtaattacccactaagtgcacatagtggtaattatccattaatcaga |
319 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18480696 |
atgttggatttt-ccctaattaagttatttatttttaattaaataaataagtggtaattacccactaagtgcacatagtggtaattatccattaatcaga |
18480794 |
T |
|
| Q |
320 |
aaattatctttattctttcccttaaatttagtaactgcccgttatgagttagtggaggagcagttttattttgcacgttcagtaacttcttgatggcata |
419 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| | |
|
|
| T |
18480795 |
aaatggtctttattctttcccttaaatttagtaactgcccattatgagtgagtggaggagcagttttgttttgcacgttcagtaacttcttgatggcaga |
18480894 |
T |
|
| Q |
420 |
acttatataaaggagtgcacttcatttgtttaggttccctaagcctaacatctctattcagaagacttacaccatcaaagtgagattgtggaaggtttag |
519 |
Q |
| |
|
| |||||||||||||||| ||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18480895 |
agttatataaaggagtgccgttcatttgttttggttgcctaagcctaacatcagtattcagaagacttacaccatcaaagtgagattgtggaaggtttag |
18480994 |
T |
|
| Q |
520 |
aagagcctcaact |
532 |
Q |
| |
|
|| |||||||||| |
|
|
| T |
18480995 |
aaaagcctcaact |
18481007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 222 - 532
Target Start/End: Original strand, 32752468 - 32752781
Alignment:
| Q |
222 |
atgttggatttttccctaattaagttatttatttatt---taaataaataagtggtaattacccactaagtgcacatagtggtaattatccattaatcag |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || |
|
|
| T |
32752468 |
atgttggatttttccctaattaagttatttattttttaattaaataaataagtggtaattacccacttggtgcacatagtggtaattatccattaattag |
32752567 |
T |
|
| Q |
319 |
aaaattatctttattctttcccttaaatttagtaactgcccgttatgagttagtggaggagcagttttattttgcacgttcagtaacttcttgatggcat |
418 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
32752568 |
aaaatggtctttattctttcccttaaatttagtaatagcccattatgagtgagtggaggagcagttttgttttgcacgttcagtaacttcttgatggcag |
32752667 |
T |
|
| Q |
419 |
aacttatataaaggagtgcacttcatttgtttaggttccctaagcctaacatctctattcagaagacttacaccatcaaagtgagattgtggaaggttta |
518 |
Q |
| |
|
|| |||||||||||| |||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
32752668 |
aagttatataaaggattgcagttcatttgttttggttctctaagcctaacatctctattcagaagacttacaccatcaaagtgagattgtaaaaggttta |
32752767 |
T |
|
| Q |
519 |
gaagagcctcaact |
532 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
32752768 |
gaagagcctcaact |
32752781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 231 - 532
Target Start/End: Original strand, 21697700 - 21697998
Alignment:
| Q |
231 |
ttttccctaattaagttatttatttat--ttaaataaataagtggtaattacccactaagtgcacatagtggtaattatccattaatcagaaaattatct |
328 |
Q |
| |
|
||||||||| ||||||||||||||| | |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
21697700 |
ttttccctatttaagttatttatttttaattaaataaataagtggtaattacccattaagtgcacatagtggtaattatccattaatcagaaaatggtct |
21697799 |
T |
|
| Q |
329 |
ttattctttcccttaaatttagtaactgcccgttatgagttagtggaggagcagttttattttgcacgttcagtaacttcttgatggcataacttatata |
428 |
Q |
| |
|
|||||||| ||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||| ||||||||||| || ||||||| |
|
|
| T |
21697800 |
ttattctt-cccttaaatttagtaactgtccattatgagtgagtggaggagcagttttattttgcacgttcagt----tcttgatggcagaagttatata |
21697894 |
T |
|
| Q |
429 |
aaggagtgcacttcatttgtttaggttccctaagcctaacatctctattcagaagacttacaccatcaaagtgagattgtggaaggtttagaagagcctc |
528 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21697895 |
aaggagtgcagttcatttgttttaattccctaagcctaacatctctattcagaagacttacaccatcaaagtgagattgtggaaggtttagaagagcctc |
21697994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 231 - 532
Target Start/End: Original strand, 7458693 - 7458996
Alignment:
| Q |
231 |
ttttccctaattaagttatttatttat--ttaaataaataagtggtaattacccactaagtgcacatagtggtaattatccattaatcagaaaattatct |
328 |
Q |
| |
|
||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
7458693 |
ttttccctaattaagttatttatttttaattaaataaataagtggtaattacccactaagtgcacatagtggtaattatccattaatcagaaaatggtct |
7458792 |
T |
|
| Q |
329 |
ttattctttcccttaaatttagtaactgcccgttatgagttagtggaggagcagttttattttgcacgttcagtaacttcttgatggcataacttatata |
428 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||| || ||||||| |
|
|
| T |
7458793 |
ttattctttcccttaaatttagtaactgcccattatgagtgagtggaggagcagttttgttttgcacgttcagtaactttttgatggcagaagttatata |
7458892 |
T |
|
| Q |
429 |
aaggagtgcacttcatttgtttaggttccctaagcctaacatctctattcagaagacttacaccatcaaagtgagattgtggaaggtttagaagagcctc |
528 |
Q |
| |
|
|||||||||| ||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
7458893 |
aaggagtgcagttcatttgttttggttccctaagcctaacatctctattcagatgacttacaccatcaaagtgagattgtgaaaggtttagaagagcctc |
7458992 |
T |
|
| Q |
529 |
aact |
532 |
Q |
| |
|
|||| |
|
|
| T |
7458993 |
aact |
7458996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 231 - 532
Target Start/End: Original strand, 7450551 - 7450854
Alignment:
| Q |
231 |
ttttccctaattaagttatttatttat--ttaaataaataagtggtaattacccactaagtgcacatagtggtaattatccattaatcagaaaattatct |
328 |
Q |
| |
|
||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
7450551 |
ttttccctaattaagttatttatttttaattaaataaataagtggtaattacccactaagtgcacatagtggtaattatccattaatcagaaaatggtct |
7450650 |
T |
|
| Q |
329 |
ttattctttcccttaaatttagtaactgcccgttatgagttagtggaggagcagttttattttgcacgttcagtaacttcttgatggcataacttatata |
428 |
Q |
| |
|
||||| ||||||||||||||||||||||||| |||||||| |||||| |||||||||| |||||||||||||||||||||||||| ||| || ||||||| |
|
|
| T |
7450651 |
ttattttttcccttaaatttagtaactgcccattatgagtgagtggatgagcagttttgttttgcacgttcagtaacttcttgatagcagaagttatata |
7450750 |
T |
|
| Q |
429 |
aaggagtgcacttcatttgtttaggttccctaagcctaacatctctattcagaagacttacaccatcaaagtgagattgtggaaggtttagaagagcctc |
528 |
Q |
| |
|
|||||||||| ||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
7450751 |
aaggagtgcagttcatttgttttggttccctaagcctaacatctctattcagatgacttacaccatcaaagtgagattgtgaaaggtttagaagagcctc |
7450850 |
T |
|
| Q |
529 |
aact |
532 |
Q |
| |
|
|||| |
|
|
| T |
7450851 |
aact |
7450854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 223 - 532
Target Start/End: Original strand, 7649198 - 7649507
Alignment:
| Q |
223 |
tgttggatttttccctaattaagttatttatttat--ttaaataaataagtggtaattacccactaagtgcacatagtggtaattatccattaatcagaa |
320 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| | |||||||||||||||||||||| | |||||||||||||||| |||||||| |||||| |||| |
|
|
| T |
7649198 |
tgttggatttttccctaattaggttatttatttttaattaaataaataagtggtaattatcagctaagtgcacatagtg-taattatctattaattagaa |
7649296 |
T |
|
| Q |
321 |
aattatctttattctttcccttaaatttagtaactgcccgttatgagttagtggaggagcagttttattttgcacgttcagtaacttcttgatggcataa |
420 |
Q |
| |
|
||| ||||||||||||| |||||||||||||||||| | |||||||| ||||||||||||||||| ||||||||||||||||||||||||||| || || |
|
|
| T |
7649297 |
aatggtctttattctttctcttaaatttagtaactgctcattatgagtgagtggaggagcagttttgttttgcacgttcagtaacttcttgatg-cagaa |
7649395 |
T |
|
| Q |
421 |
cttatataaaggagtgcacttcatttgtttaggttccctaagcctaacatctctattcagaagacttacaccatcaaagtgagattgtggaaggtttaga |
520 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
7649396 |
gttatataaaggagtgcagttcatttgttttggttccctaaacctaacatctctattcagaagacttgcaccatcaaagtgaaattgtggaaggtttaga |
7649495 |
T |
|
| Q |
521 |
agagcctcaact |
532 |
Q |
| |
|
|||||||||||| |
|
|
| T |
7649496 |
agagcctcaact |
7649507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 402 - 532
Target Start/End: Original strand, 36839780 - 36839910
Alignment:
| Q |
402 |
taacttcttgatggcataacttatataaaggagtgcacttcatttgtttaggttccctaagcctaacatctctattcagaagacttacaccatcaaagtg |
501 |
Q |
| |
|
|||||||||||||||| || ||||||||||| |||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36839780 |
taacttcttgatggcagaagttatataaaggcttgcaattcaacagttttggttccctaagcctaacatctctattcagaagacttacaccatcaaagtg |
36839879 |
T |
|
| Q |
502 |
agattgtggaaggtttagaagagcctcaact |
532 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
36839880 |
agattgtggaaggtttagaagagcctcaact |
36839910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 406 - 532
Target Start/End: Original strand, 36835757 - 36835883
Alignment:
| Q |
406 |
ttcttgatggcataacttatataaaggagtgcacttcatttgtttaggttccctaagcctaacatctctattcagaagacttacaccatcaaagtgagat |
505 |
Q |
| |
|
|||||||||||| || ||||||||||| |||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36835757 |
ttcttgatggcagaagttatataaaggcttgcaattcaacaattttggttccctaagcctaacatctctattcagaagacttacaccatcaaagtgagat |
36835856 |
T |
|
| Q |
506 |
tgtggaaggtttagaagagcctcaact |
532 |
Q |
| |
|
||||||||||||||||||| ||||||| |
|
|
| T |
36835857 |
tgtggaaggtttagaagagactcaact |
36835883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0248 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: scaffold0248
Description:
Target: scaffold0248; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 253 - 532
Target Start/End: Original strand, 19746 - 20025
Alignment:
| Q |
253 |
tttatttaaataaataagtggtaattacccactaagtgcacatagtggtaattatccattaatcagaaaattatctttattctttcccttaaatttagta |
352 |
Q |
| |
|
|||| ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
19746 |
tttaattaaatatataagtggtaattacccactaagtgcacatggtggtaattatccattaatcagaaaatagtctttattctttctcttaaatttagta |
19845 |
T |
|
| Q |
353 |
actgcccgttatgagttagtggaggagcagttttattttgcacgttcagtaacttcttgatggcataacttatataaaggagtgcacttcatttgtttag |
452 |
Q |
| |
|
||||||| |||||||| ||||||||||||||||| ||||||||||||| |||||||||||||||| || |||| |||||||||| | ||||||||||| | |
|
|
| T |
19846 |
actgcccattatgagtgagtggaggagcagttttgttttgcacgttcactaacttcttgatggcagaagttatgtaaaggagtgtagttcatttgttttg |
19945 |
T |
|
| Q |
453 |
gttccctaagcctaacatctctattcagaagacttacaccatcaaagtgagattgtggaaggtttagaagagcctcaact |
532 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
19946 |
gttcgctaagcctaacatctctattcagaagacttgcaccatcaaagtgagattgtggaatgtttagaagagcctcaact |
20025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 168; Significance: 9e-90; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 168; E-Value: 9e-90
Query Start/End: Original strand, 317 - 532
Target Start/End: Original strand, 48638665 - 48638880
Alignment:
| Q |
317 |
agaaaattatctttattctttcccttaaatttagtaactgcccgttatgagttagtggaggagcagttttattttgcacgttcagtaacttcttgatggc |
416 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||| |||||| | ||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
48638665 |
agaaaatggtctttattctttcccttaaatttagtaactgcccattatgattgagtggaggagcagttttgttttgcacgttcagtaacttcttgatggc |
48638764 |
T |
|
| Q |
417 |
ataacttatataaaggagtgcacttcatttgtttaggttccctaagcctaacatctctattcagaagacttacaccatcaaagtgagattgtggaaggtt |
516 |
Q |
| |
|
| || ||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
48638765 |
agaagttatataaaggagtggagttcatttgttttggttccctaagcctaacatctctattcaaaagacttacaccatcaaagtgagattgtggaaggtt |
48638864 |
T |
|
| Q |
517 |
tagaagagcctcaact |
532 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
48638865 |
tagaagagcctcaact |
48638880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 243 - 524
Target Start/End: Original strand, 23691459 - 23691738
Alignment:
| Q |
243 |
aagttatttatttatttaaataaataagtggtaattacccactaagtgcacatagtggtaattatccattaatcagaaaattatctttattctttccctt |
342 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||| || ||||||||| |||| ||| | |||||||||||||| |||||||| ||| |||| |
|
|
| T |
23691459 |
aagttatttatttatttaaataaataagtgataattacccattagatgcacataggggtagttacctattaatcagaaaatggtctttatttttttcctt |
23691558 |
T |
|
| Q |
343 |
aaatttagtaactgcccgttatgagttagtggaggagcagttttattttgcacgttcagtaacttcttgatggcataacttatataaaggagtgcacttc |
442 |
Q |
| |
|
|||||||||||| || | | ||| ||||||||||||||||| | || | | | || |||||||| |||||||| || ||||| ||||||| || |
|
|
| T |
23691559 |
-aatttagtaactatccatattaagtgagtggaggagcagttttttgttatgcttacggtgacttcttgttggcataagtt-gataaaagagtgcagctc |
23691656 |
T |
|
| Q |
443 |
atttgtttaggttccctaagcctaacatctctattcagaagacttacaccatcaaagtgagattgtggaaggtttagaagag |
524 |
Q |
| |
|
||| ||| | ||| |||||| |||||| ||||| | || ||||||||||||||||||||||||| |||| |||||||||| |
|
|
| T |
23691657 |
attgtttttgattctctaagcttaacatttctatgaataaaacttacaccatcaaagtgagattgtagaagatttagaagag |
23691738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 231 - 333
Target Start/End: Original strand, 48638424 - 48638528
Alignment:
| Q |
231 |
ttttccctaattaagttatttatttat--ttaaataaataagtggtaattacccactaagtgcacatagtggtaattatccattaatcagaaaattatct |
328 |
Q |
| |
|
||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |
|
|
| T |
48638424 |
ttttccctaattaagttatttatttttaattaaataaataagtggtaattacccactaagtgcacatagtggtaattatccattaattagaaaatggtct |
48638523 |
T |
|
| Q |
329 |
ttatt |
333 |
Q |
| |
|
||||| |
|
|
| T |
48638524 |
ttatt |
48638528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 402 - 473
Target Start/End: Complemental strand, 51983702 - 51983631
Alignment:
| Q |
402 |
taacttcttgatggcataacttatataaaggagtgcacttcatttgtttaggttccctaagcctaacatctc |
473 |
Q |
| |
|
||||||||||||| || || ||||||||||| |||| ||||| |||| |||||||||||||||||||||| |
|
|
| T |
51983702 |
taacttcttgatgacagaagttatataaaggcttgcaattcatcagttttggttccctaagcctaacatctc |
51983631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 241 - 274
Target Start/End: Original strand, 23688283 - 23688316
Alignment:
| Q |
241 |
ttaagttatttatttatttaaataaataagtggt |
274 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
23688283 |
ttaagttatttatttatttaaataaataagtggt |
23688316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 496 - 532
Target Start/End: Complemental strand, 51977757 - 51977721
Alignment:
| Q |
496 |
aaagtgagattgtggaaggtttagaagagcctcaact |
532 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| |
|
|
| T |
51977757 |
aaagtgagattgtggaaggtttagaagaacctcaact |
51977721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0763 (Bit Score: 73; Significance: 4e-33; HSPs: 1)
Name: scaffold0763
Description:
Target: scaffold0763; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 222 - 315
Target Start/End: Original strand, 2277 - 2371
Alignment:
| Q |
222 |
atgttggatttttccctaattaagttatttatttat--ttaaataaataagtggtaattacccactaagtgcacatagtggtaattatccattaat |
315 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2277 |
atgttggatttt-ccctaattaagttatttatttttaattaaataaataagtggtaattacccactaagtgcacatagtggtaattatccattaat |
2371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 68; Significance: 4e-30; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 296 - 524
Target Start/End: Complemental strand, 28865364 - 28865141
Alignment:
| Q |
296 |
agtggtaattatccattaatcagaaaattatctttattctttcccttaaatttagtaactgcccgttatgagttagtggaggagcagttttattttgcac |
395 |
Q |
| |
|
||||||||||| ||||| || ||||||| ||||||||||||| ||||||||||||||| | | |||||| |||||||||| ||||||||||||||| |
|
|
| T |
28865364 |
agtggtaattacccattcattagaaaatggtctttattctttctcttaaatttagtaac----cataatgagtgagtggaggagtagttttattttgcac |
28865269 |
T |
|
| Q |
396 |
gttcagtaacttcttgatggcataacttatataaaggagtgcacttcatttgtttaggttccctaagcctaacatctctattcagaagacttacaccatc |
495 |
Q |
| |
|
|| ||| || || || | | | |||||||||| |||| | |||||| |||| ||| |||||| |||||||||||||| ||||| ||| ||||| || |
|
|
| T |
28865268 |
gtgttttaatttttttatagtagatgttatataaagaagtgtagttcatt-gttttggtcccctaaacctaacatctctatacagaaaactgacaccgtc |
28865170 |
T |
|
| Q |
496 |
aaagtgagattgtggaaggtttagaagag |
524 |
Q |
| |
|
||| ||||||||||||||||||| ||||| |
|
|
| T |
28865169 |
aaaatgagattgtggaaggtttataagag |
28865141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 249 - 283
Target Start/End: Complemental strand, 28865384 - 28865350
Alignment:
| Q |
249 |
tttatttatttaaataaataagtggtaattaccca |
283 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| |
|
|
| T |
28865384 |
tttatttatttaagtaaataagtggtaattaccca |
28865350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 433 - 527
Target Start/End: Complemental strand, 35159299 - 35159205
Alignment:
| Q |
433 |
agtgcacttcatttgtttaggttccctaagcctaacatctctattcagaagacttacaccatcaaagtgagattgtggaaggtttagaagagcct |
527 |
Q |
| |
|
|||||| ||||| |||| |||||||||||||||||| ||||||||| |||| |||||| |||||||||||||||||||||||||| |||||||| |
|
|
| T |
35159299 |
agtgcaattcatgagttttggttccctaagcctaacaactctattcaaaagatttacactatcaaagtgagattgtggaaggtttaaaagagcct |
35159205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 9e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 402 - 531
Target Start/End: Original strand, 9937236 - 9937365
Alignment:
| Q |
402 |
taacttcttgatggcataacttatataaaggagtgcacttcatttgtttaggttccctaagcctaacatctctattcagaagacttacaccatcaaagtg |
501 |
Q |
| |
|
||||||||||| | || || ||||||||||| || | ||||| | || ||||||||||| ||||||| | ||||||||| |||||| |||||||||| |
|
|
| T |
9937236 |
taacttcttgacgacagaaattatataaaggcttgtaattcatcagctttggttccctaagtctaacatttttattcagaaatcttacatcatcaaagtg |
9937335 |
T |
|
| Q |
502 |
agattgtggaaggtttagaagagcctcaac |
531 |
Q |
| |
|
||||||||||||||||||||||| |||||| |
|
|
| T |
9937336 |
agattgtggaaggtttagaagagtctcaac |
9937365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0380 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0380
Description:
Target: scaffold0380; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 325 - 415
Target Start/End: Original strand, 14129 - 14219
Alignment:
| Q |
325 |
atctttattctttcccttaaatttagtaactgcccgttatgagttagtggaggagcagttttattttgcacgttcagtaacttcttgatgg |
415 |
Q |
| |
|
||||||||| ||||||||||||||||||| || || | ||||| |||||| || |||||||||||||| ||| |||||||||||||| |
|
|
| T |
14129 |
atctttattatttcccttaaatttagtaaatgtccatgctgagtgagtggataagtagttttattttgcatcttcgttaacttcttgatgg |
14219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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