View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3559_low_20 (Length: 237)
Name: NF3559_low_20
Description: NF3559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3559_low_20 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 4 - 237
Target Start/End: Original strand, 18024350 - 18024583
Alignment:
| Q |
4 |
tcaaagttgataaagatgtgaaggtcaataactcagggagaatgatattatatttaaggtaacaaaaactgaagcatgtaccagtacaaaactgctaaca |
103 |
Q |
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| T |
18024350 |
tcaaagttgataaagatgtgaaggtcaataactcagggagaatgatattatatttaaggtaacaaaaactgaagcatgtacaagtacagaactgctaaca |
18024449 |
T |
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| Q |
104 |
tgtggcaatgttagtcatcaagagcggagttttcagttatcaaagaatgtttcatatagtatacctggtaagatcacgaggacatgcaaaattgataact |
203 |
Q |
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| T |
18024450 |
tgtggcaatgttggccatcaagagcggagttttcagttatcaaagaatgtttcatatagtatacctggtaagatcacgaggacatgcaaaattgataact |
18024549 |
T |
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| Q |
204 |
gtttgaacaccgataatgtcaaggccctgtaagt |
237 |
Q |
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| T |
18024550 |
gtttgaacaccgataatgtcaaggccctgtaagt |
18024583 |
T |
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Target: chr3 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 154 - 232
Target Start/End: Original strand, 19674387 - 19674465
Alignment:
| Q |
154 |
ttcatatagtatacctggtaagatcacgaggacatgcaaaattgataactgtttgaacaccgataatgtcaaggccctg |
232 |
Q |
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| T |
19674387 |
ttcatagagtatacctggtaagatcacgtggacatgcaaaattgataactgtttgaacacctatgatgtcaagtccctg |
19674465 |
T |
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