View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3559_low_22 (Length: 235)
Name: NF3559_low_22
Description: NF3559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3559_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 35292293 - 35292493
Alignment:
| Q |
1 |
gtttttagttaacgtcggtatatataaaactgcattaaaaatagttagtcatttttaataaatnnnnnnntattttgatttcagaatgtgtgagaggttg |
100 |
Q |
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| T |
35292293 |
gtttttagttaacgtcggtatatataaaactgcattagaaatagttagtcatttttaataaataaaaagttattttgatttcagaatgtgtgagaggttg |
35292392 |
T |
|
| Q |
101 |
tcactctaacctgtgattgtattaaaattacaaaaagatatggaaaatgccggttctcctcatagaaaaacgaatga---tttttacactaaatataatt |
197 |
Q |
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|||||||||| ||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||| |||||||||||||||||||| |
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| T |
35292393 |
tcactctaacatgtgattgtattaaaattacaaaaatatatggaaaatgccagttctcctgatagaaaaacgaatgattttttttacactaaatataatt |
35292492 |
T |
|
| Q |
198 |
a |
198 |
Q |
| |
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| |
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| T |
35292493 |
a |
35292493 |
T |
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