View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3559_low_4 (Length: 526)
Name: NF3559_low_4
Description: NF3559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3559_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 454; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 17 - 507
Target Start/End: Original strand, 30689007 - 30689497
Alignment:
| Q |
17 |
cgttggagcaacctcttttgtagccaaattcctttcgccacctatagattctgtcactttggcctgcttctcttcctcctcctattaaatatcttgcaac |
116 |
Q |
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| T |
30689007 |
cgttggagccacctcttttgtagccaaattcctttcgccacctatagattctgtcactttggcctgcttctcttcctcctcctattaaatatcttgcaac |
30689106 |
T |
|
| Q |
117 |
catcaatctcaaatctaaagtaacaagtatactgaaagcatagcaacttcaacaagaaaatcaacatatttagtgattcagatacaatgttggttggatg |
216 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30689107 |
catcaatctcaaatctaaagtaacaagtataccgaaagcatagcaacttcaacaagaaaatcaacatatttagtgattcagatacaatgttggttggatg |
30689206 |
T |
|
| Q |
217 |
acaatagttgaaaaaggaaaatactcatgaacatagaactaaatttttcaaaaatgacttatgtaggctagcagnnnnnnntatatttctcccccattcg |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
30689207 |
acaatagttgaaaaaggaaaatactcatgaacatagaactgaatttttcaaaaatgacttatgtaggctagcagaaaaaaaaatatttctcccccattcg |
30689306 |
T |
|
| Q |
317 |
tccattctatatttcttcctactagacttcattacaaatacatatgaaaattctatgatcctgcaactagtaattattcacaatgttaaagtgaaatgaa |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30689307 |
tccattctatatttcttcctactagacttcattacaaatacatatgaaaattctatgatcctgcaactagtaattattcacaatgttaaagtgaaatgaa |
30689406 |
T |
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| Q |
417 |
gcaaggcttttaacaaactactttaaaattataatggaaatcaccaactcatgcctccgtcgcaaaacataaatatctctgatgacggcac |
507 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30689407 |
gcaaggcttttaacaaactactttaaaattataatggaaatcaccaactcatgcctccgtcgcaaaacataaatatctctgatgacggcac |
30689497 |
T |
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