View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3559_low_5 (Length: 495)
Name: NF3559_low_5
Description: NF3559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3559_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 11 - 470
Target Start/End: Complemental strand, 31820824 - 31820369
Alignment:
| Q |
11 |
cacagaccacatgagttttatccttgaacatttgacgtcactatggggccgcaataaaacttttcccaactagactctcttaaataaagaaccatgacca |
110 |
Q |
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| T |
31820824 |
cacaaaccacgtgagttttatccttgaacatttgacgccactatggggccgcaataaaacttttcccgactaggctctcttaaataaagatccatgacca |
31820725 |
T |
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| Q |
111 |
aaagcaatccaatgatcattgacatcaaagtttcacgttgatttccgtcaatagtgagaccaaaaagaaaa-cttaagttactcattcagacttaaaccc |
209 |
Q |
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| T |
31820724 |
aaagcaatccaatgatcattgacaccaaagtttcacgttgatttccgtcaatagtgagaccaaaaaaaaaaacttaagttactcatttagacttaaaccc |
31820625 |
T |
|
| Q |
210 |
taaacacactaattttgagcacattacatcaccgacacaaatcacaaaagttctactacatctacctcttttttgtcaaaagaaatgagtgtgtctcaca |
309 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |
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| T |
31820624 |
taaacacactaattttgagcacattacatctccgacacaaatcacaaaagttctactacatctacctcttttttgtcaaaaaaaaagagtgtgtctcaca |
31820525 |
T |
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| Q |
310 |
acggaatcgtaaaaatagagttttaatcaattcttctaaagaaaaattaactaaatttattaatctatatactgtgttacagatttaaactttgaataat |
409 |
Q |
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|||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |
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| T |
31820524 |
acggaatcgtaaaaatagagttttaatcgattcttct-----aaaattaactaaatttattaatctatatgctatgttacagatttaaactttgaataat |
31820430 |
T |
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| Q |
410 |
ggtaagaacaccttctcgaacacacactttcttacctactctatactattgattgaaattc |
470 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |
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| T |
31820429 |
ggtaagaacaccttctcgaacacacactttcttacctactctatgctattggttgaaattc |
31820369 |
T |
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