View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3559_low_6 (Length: 473)

Name: NF3559_low_6
Description: NF3559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3559_low_6
NF3559_low_6
[»] chr8 (7 HSPs)
chr8 (239-466)||(28507081-28507308)
chr8 (239-466)||(28494535-28494762)
chr8 (101-229)||(28503092-28503220)
chr8 (101-229)||(28510650-28510778)
chr8 (1-105)||(28506414-28506518)
chr8 (247-466)||(28491224-28491443)
chr8 (75-180)||(13798389-13798495)
[»] chr6 (1 HSPs)
chr6 (11-223)||(17795069-17795281)
[»] chr4 (4 HSPs)
chr4 (11-225)||(2762294-2762510)
chr4 (14-157)||(2758428-2758572)
chr4 (14-95)||(2767993-2768074)
chr4 (44-96)||(17261968-17262020)
[»] scaffold0123 (1 HSPs)
scaffold0123 (11-110)||(12954-13053)


Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-113; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 239 - 466
Target Start/End: Original strand, 28507081 - 28507308
Alignment:
Q  239 ccatctctctcatctctaggcactgagtaccccatcttcttttcctccaacactcttgcatttattccttgatctgcaagatacgtcaacaacacaagtg 338  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  28507081 ccatctctctcatctctaggcactgagtaccccatcttcttttcctccaacactcttgcatttattccttgatctgaaagatacgtcaacaacacaagtg 28507180  T
Q  339 gcttctcattctgaacggcctctaccaccgatgtccaccctgcatgagtcaagaatccaccaactgctatgtgacctaatatcttcatttgtgggaccca 438  Q
    |||||||||  ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  28507181 gcttctcatgttgaactgcctctaccaccgatgtccaccctgcatgagtcaagaatccaccaactgccatgtgacctaatatcttcatttgtgggaccca 28507280  T
Q  439 atcagtgcataccactccacgtcctttg 466  Q
    ||||||||||||||||||||||||||||    
T  28507281 atcagtgcataccactccacgtcctttg 28507308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 239 - 466
Target Start/End: Original strand, 28494535 - 28494762
Alignment:
Q  239 ccatctctctcatctctaggcactgagtaccccatcttcttttcctccaacactcttgcatttattccttgatctgcaagatacgtcaacaacacaagtg 338  Q
    ||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||| |||| |||||||||||||    
T  28494535 ccatctctctcatctctaggcactgagtatcccatcttcttttcttccaacattcttgcatttattccttgatctgcaagacacgttaacaacacaagtg 28494634  T
Q  339 gcttctcattctgaacggcctctaccaccgatgtccaccctgcatgagtcaagaatccaccaactgctatgtgacctaatatcttcatttgtgggaccca 438  Q
    |||||||||  ||||| || ||||||||||||||||||||||||||||||||||||||||||||||| | ||| | ||||||||||||||||||| ||||    
T  28494635 gcttctcatgttgaactgcttctaccaccgatgtccaccctgcatgagtcaagaatccaccaactgccacgtggcttaatatcttcatttgtggggccca 28494734  T
Q  439 atcagtgcataccactccacgtcctttg 466  Q
     ||||||||||||||||||||| |||||    
T  28494735 ttcagtgcataccactccacgtactttg 28494762  T

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Target: chr8; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 101 - 229
Target Start/End: Complemental strand, 28503220 - 28503092
Alignment:
Q  101 aatacactaaaaaattacaaaactaaaactatatcaagccaaacctattcataaacaaaagcacgctacttgaaagattagcaccttgatatatgaatgg 200  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  28503220 aatacactaaacaattacaaaactaaaactatatcaagccaaacctattcataaacaaaagcacactacttgaaagattaacaccttgatatatgaatgg 28503121  T
Q  201 attattgacaaattaattgccaagattaa 229  Q
    |||||||||||||||||||||||||||||    
T  28503120 attattgacaaattaattgccaagattaa 28503092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 101 - 229
Target Start/End: Complemental strand, 28510778 - 28510650
Alignment:
Q  101 aatacactaaaaaattacaaaactaaaactatatcaagccaaacctattcataaacaaaagcacgctacttgaaagattagcaccttgatatatgaatgg 200  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  28510778 aatacactaaacaattacaaaactaaaactatatcaagccaaacctattcataaacaaaagcacactacttgaaagattaacaccttgatatatgaatgg 28510679  T
Q  201 attattgacaaattaattgccaagattaa 229  Q
    |||||||||||||||||||||||||||||    
T  28510678 attattgacaaattaattgccaagattaa 28510650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 28506518 - 28506414
Alignment:
Q  1 tgcacatgtttcgaatgataagagataaacaatgcaataataccaatttaatatgattaagaaatccaactataaattgtattatgattaatcaaacttc 100  Q
    |||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| | ||||||||||||||||||    
T  28506518 tgcacacgtttcgaatgataagagataaacaatgcaataataacaattcaatatgattaagaaatccaactataaattggactatgattaatcaaacttc 28506419  T
Q  101 aatac 105  Q
    |||||    
T  28506418 aatac 28506414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 247 - 466
Target Start/End: Original strand, 28491224 - 28491443
Alignment:
Q  247 ctcatctctaggcactgagtaccccatcttcttttcctccaacactcttgcatttattccttgatctgcaagatacgtcaacaacacaagtggcttctca 346  Q
    ||||||||||||||| | |||  ||||||||||||| ||||||||  | ||||||||||| || ||| ||||| | |||| ||||||||||||||||||     
T  28491224 ctcatctctaggcaccgtgtatgccatcttcttttcttccaacaccttcgcatttattccctggtctacaagaaatgtcatcaacacaagtggcttctcg 28491323  T
Q  347 ttctgaacggcctctaccaccgatgtccaccctgcatgagtcaagaatccaccaactgctatgtgacctaatatcttcatttgtgggacccaatcagtgc 446  Q
    || ||||| || || ||||| |||||||| ||||| ||||  |||||  |||||| ||| ||||| ||||||||||||||||| ||  ||||||||||||    
T  28491324 ttttgaactgcttccaccactgatgtccaacctgcgtgagaaaagaacacaccaattgccatgtgccctaatatcttcatttgcggagcccaatcagtgc 28491423  T
Q  447 ataccactccacgtcctttg 466  Q
    |||| ||||| || ||||||    
T  28491424 atacaactccgcgccctttg 28491443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 75 - 180
Target Start/End: Original strand, 13798389 - 13798495
Alignment:
Q  75 aattgtattatgattaatcaaacttcaatacactaaaaaatt-acaaaactaaaactatatcaagccaaacctattcataaacaaaagcacgctacttga 173  Q
    |||||| ||||||||||||||| ||||||||| |||| |||| ||||||||| |||||| ||| |||||||||||| |||||||||| ||| |||||||     
T  13798389 aattgttttatgattaatcaaaattcaatacaataaacaatttacaaaactataactatctcatgccaaacctattgataaacaaaaacacactacttgg 13798488  T
Q  174 aagatta 180  Q
    |||||||    
T  13798489 aagatta 13798495  T

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Target: chr6 (Bit Score: 93; Significance: 4e-45; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 11 - 223
Target Start/End: Original strand, 17795069 - 17795281
Alignment:
Q  11 tcgaatgataagagataaacaatgcaataataccaatttaatatgattaagaaatccaactataaattgtattatgattaatcaaacttcaatacactaa 110  Q
    ||||||||||||||||||| ||||  ||||||| |||| |||||||  ||||||| ||||||| |||||||||||||||||||||| |||||||||||||    
T  17795069 tcgaatgataagagataaataatgtgataatactaattcaatatgaagaagaaattcaactatgaattgtattatgattaatcaaaattcaatacactaa 17795168  T
Q  111 aaaattacaaaactaaaactatatcaagccaaacctattcataaacaaaagcacgctacttgaaagattagcaccttgatatatgaatggattattgaca 210  Q
    ||| ||||||||||| |||||| | ||||||||    ||  ||| ||||| ||| || |||||||||||| || ||| ||||||||||| ||||||||||    
T  17795169 aaatttacaaaactataactatctaaagccaaaaaatttgttaagcaaaaacacacttcttgaaagattaacatctttatatatgaatgaattattgaca 17795268  T
Q  211 aattaattgccaa 223  Q
     ||| ||||||||    
T  17795269 cattgattgccaa 17795281  T

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Target: chr4 (Bit Score: 71; Significance: 6e-32; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 11 - 225
Target Start/End: Complemental strand, 2762510 - 2762294
Alignment:
Q  11 tcgaatgataagagataaacaat--gcaataataccaatttaatatgattaagaaatccaactataaattgtattatgattaatcaaacttcaatacact 108  Q
    ||||||||||| || ||||||||  |||| |||||||||| |||||||  ||||||| ||||||| |||||||||||||||||||||    |||||| ||    
T  2762510 tcgaatgataaaagctaaacaatatgcaacaataccaattcaatatgaacaagaaattcaactatgaattgtattatgattaatcaagagccaatacgct 2762411  T
Q  109 aa-aaaattacaaaactaaaactatatcaagccaaacctattcataaacaaaagcacgctacttgaaagattagcaccttgatatatgaatggattattg 207  Q
    ||  || ||||||||||| |||||| |||| ||||||||  | | | |||||||||| | |||  ||| |||| || |||||||||||||||||||||||    
T  2762410 aatcaacttacaaaactataactatctcaaaccaaacctgat-aaacacaaaagcacacaactaaaaatattaacaacttgatatatgaatggattattg 2762312  T
Q  208 acaaattaattgccaaga 225  Q
    |||| |||||||||||||    
T  2762311 acaagttaattgccaaga 2762294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 14 - 157
Target Start/End: Complemental strand, 2758572 - 2758428
Alignment:
Q  14 aatgataagagataaacaatgcaataataccaatttaatatgattaagaaatccaactataaattgtattatgattaatcaaacttcaatacactaa-aa 112  Q
    |||||||| || ||||||||||||||||||||||| |||||||  ||||||| ||||||| |||||||||||||||||||||   ||||||||||||  |    
T  2758572 aatgataaaagctaaacaatgcaataataccaattcaatatgaacaagaaattcaactatgaattgtattatgattaatcaagagtcaatacactaatca 2758473  T
Q  113 aattacaaaactaaaactatatcaagccaaacctattcataaaca 157  Q
    | |||||||| || |||||| |||| ||||||||||| |||||||    
T  2758472 acttacaaaattataactatctcaaaccaaacctattgataaaca 2758428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 14 - 95
Target Start/End: Complemental strand, 2768074 - 2767993
Alignment:
Q  14 aatgataagagataaacaatgcaat-aataccaatttaatatgattaagaaatccaactataaattgtattatgattaatcaa 95  Q
    |||||||| |||||||||||||||| |||||||||| ||||| |  ||||||| ||| ||  |||||||||||||||||||||    
T  2768074 aatgataaaagataaacaatgcaataaataccaattcaatat-aacaagaaattcaattacgaattgtattatgattaatcaa 2767993  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 44 - 96
Target Start/End: Original strand, 17261968 - 17262020
Alignment:
Q  44 caatttaatatgattaagaaatccaactataaattgtattatgattaatcaaa 96  Q
    ||||| ||||| | |||||||||||||||||||||||| |||||| |||||||    
T  17261968 caattcaatataaataagaaatccaactataaattgtaatatgatcaatcaaa 17262020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 11 - 110
Target Start/End: Complemental strand, 13053 - 12954
Alignment:
Q  11 tcgaatgataagagataaacaatgcaataataccaatttaatatgattaagaaatccaactataaattgtattatgattaatcaaacttcaatacactaa 110  Q
    |||||||||||||||||||  |||  ||||||| |||| ||||||| |||||||| ||||||| |||||||||||||||||||||| |||||||||||||    
T  13053 tcgaatgataagagataaatcatgtgataatactaattcaatatgaataagaaattcaactatgaattgtattatgattaatcaaaattcaatacactaa 12954  T

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