View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3561_high_12 (Length: 245)

Name: NF3561_high_12
Description: NF3561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3561_high_12
NF3561_high_12
[»] chr6 (4 HSPs)
chr6 (12-170)||(5162146-5162309)
chr6 (202-236)||(5162080-5162114)
chr6 (12-52)||(1974080-1974120)
chr6 (12-52)||(20897424-20897464)
[»] chr7 (1 HSPs)
chr7 (15-65)||(40578159-40578209)
[»] chr3 (1 HSPs)
chr3 (15-65)||(40476303-40476352)
[»] chr5 (1 HSPs)
chr5 (12-52)||(6893935-6893975)
[»] chr4 (2 HSPs)
chr4 (12-52)||(17281664-17281704)
chr4 (12-52)||(17370166-17370206)
[»] chr1 (1 HSPs)
chr1 (12-52)||(20723613-20723653)


Alignment Details
Target: chr6 (Bit Score: 97; Significance: 9e-48; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 12 - 170
Target Start/End: Complemental strand, 5162309 - 5162146
Alignment:
Q  12 atcatcagtaaagtgaggtcaatgattattttaaaaaacaacaaaaatttacagagat-----------tattatttttgcagggatcaaaagtacctaa 100  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||           |||||||||||||||||||||||||||| ||    
T  5162309 atcatcagtaaagtggggtcaatgattattttaaaaaacaacaaaaatttacagagatgaatctcaaattattatttttgcagggatcaaaagtacccaa 5162210  T
Q  101 gctcttcatattcatatttgcagagataaaaaacatattttagctgtatgtattcgatgtatagtcaaac 170  Q
     |||||||||||      ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5162209 actcttcatatt------tgcagagataaaaaacatattttagctgtatgtattcgatgtatagtcaaac 5162146  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 202 - 236
Target Start/End: Complemental strand, 5162114 - 5162080
Alignment:
Q  202 actccctcaaatataaaaccgattattggtcttgc 236  Q
    |||||||||||||||||||||||||||||||||||    
T  5162114 actccctcaaatataaaaccgattattggtcttgc 5162080  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 52
Target Start/End: Original strand, 1974080 - 1974120
Alignment:
Q  12 atcatcagtaaagtgaggtcaatgattattttaaaaaacaa 52  Q
    |||||| |||||||| ||||||||| |||||||||||||||    
T  1974080 atcatctgtaaagtggggtcaatgactattttaaaaaacaa 1974120  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 52
Target Start/End: Original strand, 20897424 - 20897464
Alignment:
Q  12 atcatcagtaaagtgaggtcaatgattattttaaaaaacaa 52  Q
    ||||||||||||||| |||||| || |||||||||||||||    
T  20897424 atcatcagtaaagtggggtcaaagactattttaaaaaacaa 20897464  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 15 - 65
Target Start/End: Original strand, 40578159 - 40578209
Alignment:
Q  15 atcagtaaagtgaggtcaatgattattttaaaaaacaacaaaaatttacag 65  Q
    ||||||||||||||||||| |||||||||||||||||| ||||||||||||    
T  40578159 atcagtaaagtgaggtcaaagattattttaaaaaacaaaaaaaatttacag 40578209  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 65
Target Start/End: Complemental strand, 40476352 - 40476303
Alignment:
Q  15 atcagtaaagtgaggtcaatgattattttaaaaaacaacaaaaatttacag 65  Q
    |||| ||||||| |||||| |||||||||||||||||| ||||||||||||    
T  40476352 atcaataaagtggggtcaaggattattttaaaaaacaa-aaaaatttacag 40476303  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 52
Target Start/End: Original strand, 6893935 - 6893975
Alignment:
Q  12 atcatcagtaaagtgaggtcaatgattattttaaaaaacaa 52  Q
    ||||||| ||||||| ||||||||| |||||||||||||||    
T  6893935 atcatcaataaagtggggtcaatgactattttaaaaaacaa 6893975  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 52
Target Start/End: Complemental strand, 17281704 - 17281664
Alignment:
Q  12 atcatcagtaaagtgaggtcaatgattattttaaaaaacaa 52  Q
    ||||||||||||||| |||||| |||||||| |||||||||    
T  17281704 atcatcagtaaagtggggtcaaggattatttaaaaaaacaa 17281664  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 52
Target Start/End: Complemental strand, 17370206 - 17370166
Alignment:
Q  12 atcatcagtaaagtgaggtcaatgattattttaaaaaacaa 52  Q
    ||||||||||||||| |||||| |||||||| |||||||||    
T  17370206 atcatcagtaaagtggggtcaaggattatttaaaaaaacaa 17370166  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 52
Target Start/End: Original strand, 20723613 - 20723653
Alignment:
Q  12 atcatcagtaaagtgaggtcaatgattattttaaaaaacaa 52  Q
    ||||||||||||||| |||||| || |||||||||||||||    
T  20723613 atcatcagtaaagtggggtcaaggactattttaaaaaacaa 20723653  T

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