View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3561_high_5 (Length: 294)
Name: NF3561_high_5
Description: NF3561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3561_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 6485907 - 6485626
Alignment:
| Q |
1 |
ttctccagacaaaacctacctctactctgcttcatgggacagaaccgtcaaagtttggagaatcgccgattcaaagtgcttggaatccattacttcccat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6485907 |
ttctccagacaaaacctacctctactctgcttcatgggacagaaccgtcaaagtttggagaatcgccgattcaaagtgcttggaatccattacttcccat |
6485808 |
T |
|
| Q |
101 |
gaggatgcagttaacgccgtcgtttgtggaaacgacggaattgttttctctggttcagcagacggaacagttaaagtgtggcgaagagaaccacgtggta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6485807 |
gaggatgcagttaacgccgtcgtttgtggaaacgacggaattgttttctctggttcagcagacggaacagttaaagtgtggcgaagagaaccacgtggta |
6485708 |
T |
|
| Q |
201 |
aagcaacaaaacatgtaatggttaaacaacttttaaaacaagaatgtgcagtaactgctttagcaattgacagcacaggttc |
282 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6485707 |
aagcaacaaaacatgtaatggttaaacaacttttaaaacaagaatgtgcagtaactgctttagcaattgacagcacaggttc |
6485626 |
T |
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