View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3561_high_6 (Length: 294)
Name: NF3561_high_6
Description: NF3561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3561_high_6 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 258; Significance: 1e-144; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 12861319 - 12861596
Alignment:
| Q |
1 |
taggtcgtggcagatatgaaaactttcgcacttaccatgtctacattcatgaaagccaaatcaacttcgaagtcaccgttaccgccactgcttccgtcgt |
100 |
Q |
| |
|
||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
12861319 |
taggtcgtgacagatatgaaaaccttcgcacttaccatgtctacattcacgaaagccaaatcaacttcgaagtcaccgttaccgccactgcttccgttgt |
12861418 |
T |
|
| Q |
101 |
aacaaactggctccgtacaatgctcgatcatcaccttcaatacctccgcaactgtaatcttgttgtcggcctcggcgttcaatggactaaccgcaacctt |
200 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12861419 |
aacaaactggctccgtactatgctcgatcatcaccttcaatacctccgcaactgtaatcttgttgtcggcctcggcgttcaatggactaaccgcaacctt |
12861518 |
T |
|
| Q |
201 |
gatcctcccgccgacacgctacagttatgcatcggtggcagctgtcttatcttccacctctctcgcgcagatatgatt |
278 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12861519 |
gatcctcccgccgacacgctacagttatgcatcggtggcagctgtcttatcttccacctctctcgcgcagatatgatt |
12861596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 12844198 - 12844050
Alignment:
| Q |
1 |
taggtcgtggcagatatgaaaactttcgcacttaccatgtctacattcatgaaagccaaatcaacttcgaagtcaccgttaccgccactgcttccgtcgt |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
12844198 |
taggtcgtggcagatatgaaaaccttcgcacttaccatgtctacattcatgaaagccaaatcaacttcgaagtcaccgttaccgccacagcttccgtcgt |
12844099 |
T |
|
| Q |
101 |
aacaaactggctccgtacaatgctcgatcatcaccttcaatacctccgc |
149 |
Q |
| |
|
|||||||||||||| | |||||| ||||||| |||||| ||||||| |
|
|
| T |
12844098 |
aacaaactggctccaaagtatgctcaatcatcattttcaatccctccgc |
12844050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 154 - 278
Target Start/End: Complemental strand, 12844009 - 12843885
Alignment:
| Q |
154 |
gtaatcttgttgtcggcctcggcgttcaatggactaaccgcaaccttgatcctcccgccgacacgctacagttatgcatcggtggcagctgtcttatctt |
253 |
Q |
| |
|
||||||| |||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
12844009 |
gtaatctcattgtcggccttggcgttcaatggactcccggcaaccttgatcctcccgccgacacgctacagttatgcatcagtggcagctgtcttatctt |
12843910 |
T |
|
| Q |
254 |
ccacctctctcgcgcagatatgatt |
278 |
Q |
| |
|
||||||||||| ||| ||||||||| |
|
|
| T |
12843909 |
ccacctctctctcgccgatatgatt |
12843885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University