View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3561_high_7 (Length: 288)

Name: NF3561_high_7
Description: NF3561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3561_high_7
NF3561_high_7
[»] chr6 (1 HSPs)
chr6 (7-288)||(5161778-5162058)


Alignment Details
Target: chr6 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 7 - 288
Target Start/End: Complemental strand, 5162058 - 5161778
Alignment:
Q  7 aaaagtatatctatgttgactgaaaatacacgttgtattgactgacct----cagactgttatatgatatctctttcggttaaaaaatcttcatcttcat 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||| ||||||||||||||||     
T  5162058 aaaagtatatctatgttgactgaaaatacacgttgtattgactgacctgtctcagactgttatatgatatctctttcggttagaaaatcttcatcttca- 5161960  T
Q  103 cttcagatctaacaagcataagtaaacagtagctaccaatggacaaggttagtgagtttcgttttcagtctcttagactcttacagatcttcatcgtcag 202  Q
         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5161959 -----gatctaacaagcataagtaaacagtagctaccaatggacaaggttagtgagtttcgttttcagtctcttagactcttacagatcttcatcgtcag 5161865  T
Q  203 cttcgctttgtgttgt-cactgatgcaatattattattctttctttattcttgaattagctaaaagcaaaggaggaagcagcctcat 288  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  5161864 cttcgctttgtgttgtccactgatgcaatattattattctttctttattcttgaattagctaaaagcaaaggaggaaccagcctcat 5161778  T

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