View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3561_low_1 (Length: 669)

Name: NF3561_low_1
Description: NF3561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3561_low_1
NF3561_low_1
[»] chr7 (11 HSPs)
chr7 (19-492)||(30300090-30300563)
chr7 (182-492)||(30315748-30316065)
chr7 (244-492)||(30287214-30287462)
chr7 (233-492)||(30304882-30305147)
chr7 (510-626)||(30299937-30300053)
chr7 (244-492)||(30292248-30292485)
chr7 (510-625)||(30292095-30292211)
chr7 (510-625)||(30304729-30304845)
chr7 (510-625)||(30287061-30287177)
chr7 (510-574)||(30315647-30315711)
chr7 (175-221)||(30305166-30305212)
[»] chr1 (1 HSPs)
chr1 (449-489)||(46810542-46810582)


Alignment Details
Target: chr7 (Bit Score: 363; Significance: 0; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 19 - 492
Target Start/End: Complemental strand, 30300563 - 30300090
Alignment:
Q  19 gtaactagagtttgaatctcgattcttccatctgtatttgtgagtttcagtaattatttgtcattttgtcttctattaaatatttttatgggggtttcat 118  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||    
T  30300563 gtaactagagtttgaatctcgattcttccacctgtatttgtgagtttcagtagttatttgtcattttgtcttctatcaaatatttttatgggggtttcat 30300464  T
Q  119 gcttgcaccattatgtgcttgataaagttactcatactcnnnnnnnnnnnnnnnnncaatagaaaagaaaagctgttcatatagtaacatagattagtat 218  Q
    |||||||||||||||||||||||||||||||| ||||||                 |||||||||||||||||||||||||||||| ||||||| |||||    
T  30300463 gcttgcaccattatgtgcttgataaagttactgatactcttgttttttttttttttcaatagaaaagaaaagctgttcatatagtagcatagatgagtat 30300364  T
Q  219 tatgagnnnnnnnntagtagtaagagaggtggcacaaaacttattcttgattaatttattcatggtagaaaggtggaactctagatacaagatattgccg 318  Q
    |||||         |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  30300363 tatgaaaaaaaaaatagtagtaagagaggtggcacaaaacttattcttgattaatttattcatggtggaaaggtggaactctagatacaagatattgccg 30300264  T
Q  319 ttttattctctgctcactatgagctatgactccttacagcatacaagcataatatttgatcactcattaaaatactcccaaaattgaagatataagctcc 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30300263 ttttattctctgctcactatgagctatgactccttacagcatacaagcataatatttgatcactcattaaaatactcccaaaattgaagatataagctcc 30300164  T
Q  419 ctttttctctggcttcgaccttcttccctttccctttgttgaggctgagcatttgcaaagtaagattgtctctg 492  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30300163 ctttgtctctggcttcgaccttcttccctttccctttgttgaggctgagcatttgcaaagtaagattgtctctg 30300090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 182 - 492
Target Start/End: Complemental strand, 30316065 - 30315748
Alignment:
Q  182 aaagaaaagctgttcatatagtaacatagattagtattatgagnnnnnnnntagtagtaagagaggtggcacaaaacttattcttgattaatttattcat 281  Q
    ||||||||||||||||||||||| ||||||| |||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||    
T  30316065 aaagaaaagctgttcatatagtagcatagatgagtattatgagaaaaaaaatagtagtaagagaggtggcacaaaacttattcttgattaatttattcat 30315966  T
Q  282 ggtagaaa-ggtggaactctagatacaa------gatattgccgttttattctctgctcactatgagctatgactccttacagcatacaagcataatatt 374  Q
     ||| ||| ||||||||||||| |||||      |||| |||||||||||||| |||||||||||||||||   ||||||||||||||| |||||| |||    
T  30315965 agtacaaaaggtggaactctagttacaattacaagataatgccgttttattctttgctcactatgagctatagttccttacagcatacatgcataacatt 30315866  T
Q  375 tgatcactcattaaaatactcccaaaattgaagatataagctccctttttctctggcttcgaccttcttccctttccctttgttgaggctgagcatttgc 474  Q
    ||||||||||||||||  |||||||||||||||| ||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30315865 tgatcactcattaaaaagctcccaaaattgaagaaataggctccctttgtctctggcttcgaccttcttccctttccctttgttgaggctgagcatttgc 30315766  T
Q  475 aaagtaagattgtctctg 492  Q
    ||||||||||||||||||    
T  30315765 aaagtaagattgtctctg 30315748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 177; E-Value: 5e-95
Query Start/End: Original strand, 244 - 492
Target Start/End: Complemental strand, 30287462 - 30287214
Alignment:
Q  244 gaggtggcacaaaacttattcttgattaatttattcatggtagaaaggtggaactctagatacaagatattgccgttttattctctgctcactatgagct 343  Q
    |||| ||||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||||||| |||||||||||||| | |||| ||||||||    
T  30287462 gaggaggcacaaaacttattcttgattaatttattcatagtagaaaggaggaactctagttacaagataatgccgttttattcttttctcattatgagct 30287363  T
Q  344 atgactccttacagcatacaagcataatatttgatcactcattaaaatactcccaaaattgaagatataagctccctttttctctggcttcgaccttctt 443  Q
    ||   ||||||||||||||| |||||| |||||||||||||||||||  |||||||||||||||| ||| ||||||||| ||||||||||||||||||||    
T  30287362 atagttccttacagcatacatgcataacatttgatcactcattaaaaagctcccaaaattgaagaaataggctccctttgtctctggcttcgaccttctt 30287263  T
Q  444 ccctttccctttgttgaggctgagcatttgcaaagtaagattgtctctg 492  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  30287262 ccctttccctttgttgaggctgagcatttgcaaagtaagattgtctctg 30287214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 147; E-Value: 4e-77
Query Start/End: Original strand, 233 - 492
Target Start/End: Complemental strand, 30305147 - 30304882
Alignment:
Q  233 tagtagtaagagaggtggcacaaaacttattcttgattaatttattcatggtagaaaggtggaactctagata------caagatattgccgttttattc 326  Q
    |||||| |||||||||||| |||||||||||||||||| | |||||||| |||||||||||||||||||| ||      ||||||| |||||||||||||    
T  30305147 tagtagcaagagaggtggctcaaaacttattcttgattcagttattcatagtagaaaggtggaactctagttatagttacaagataatgccgttttattc 30305048  T
Q  327 tctgctcactatgagctatgactccttacagcatacaagcataatatttgatcactcattaaaatactcccaaaattgaagatataagctccctttttct 426  Q
       ||||| ||| ||||||  |||| || | |||||  ||||||||||||||||||||||||||  |||||||||||||||| ||| ||||||||| |||    
T  30305047 atcgctcattattagctatagctccatatatcatacttgcataatatttgatcactcattaaaaagctcccaaaattgaagaaataggctccctttgtct 30304948  T
Q  427 ctggcttcgaccttcttccctttccctttgttgaggctgagcatttgcaaagtaagattgtctctg 492  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30304947 ctggcttcgaccttcttccctttccctttgttgaggctgagcatttgcaaagtaagattgtctctg 30304882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 510 - 626
Target Start/End: Complemental strand, 30300053 - 30299937
Alignment:
Q  510 agggaatgctagctctttcactggtctctgaatttggcttatcacattgtcttcctcaccttcaaatttgaaatcaaacaaaaataaacatatcttaatt 609  Q
    ||||||||||| |||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  30300053 agggaatgctacctctttcactggtctctctatttggcttatcacattgtcttcctcaccttcaaatttgaaatcacacaaaaataaacatatcttaatt 30299954  T
Q  610 agattttactcattcat 626  Q
    |||||||||||||||||    
T  30299953 agattttactcattcat 30299937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 244 - 492
Target Start/End: Complemental strand, 30292485 - 30292248
Alignment:
Q  244 gaggtggcacaaaacttattcttgattaatttattcatggtagaaaggtggaactctagata------caagatattgccgttttattctctgctcacta 337  Q
    ||||||||||||||||| |||||||||||||||||||| |||| || |||||||||||| ||      |||| || |||||||||||||  |||||||||    
T  30292485 gaggtggcacaaaacttgttcttgattaatttattcatagtaggaaagtggaactctagttatagttacaagctaatgccgttttattcattgctcacta 30292386  T
Q  338 tgagctatgactccttacagcatacaagcataatatttgatcactcattaaaatactcccaaaattgaagatataagctccctttttctctggcttcgac 437  Q
    ||||||         || |||||||||||||||||          ||||||||   |||| |||||||||| ||| ||||||||||||||||||||||||    
T  30292385 tgagct---------tagagcatacaagcataataag--------cattaaaacgttcccgaaattgaagaaataggctccctttttctctggcttcgac 30292303  T
Q  438 cttcttccctttccctttgttgaggctgagcatttgcaaagtaagattgtctctg 492  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30292302 cttcttccctttccctttgttgaggctgagcatttgcaaagtaagattgtctctg 30292248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 510 - 625
Target Start/End: Complemental strand, 30292211 - 30292095
Alignment:
Q  510 agggaatgctagctctttcactggtctctgaatttggcttatcacattgtcttcctcaccttcaaatttgaaatcaaac-aaaaataaacatatcttaat 608  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  ||||| || ||||||||||||||||||||    
T  30292211 agggaatgctagctctttcactggtctctgaatttggcttatcacattgtcctcctcaccttcaaatttccaatcacacaaaaaataaacatatcttaat 30292112  T
Q  609 tagattttactcattca 625  Q
    ||| |||| || |||||    
T  30292111 tagctttttcttattca 30292095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 510 - 625
Target Start/End: Complemental strand, 30304845 - 30304729
Alignment:
Q  510 agggaatgctagctctttcactggtctctgaatttggcttatcacattgtcttcctcaccttcaaatttgaaatcaaac-aaaaataaacatatcttaat 608  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  ||||| || ||||||||||||||||||||    
T  30304845 agggaatgctagctctttcactggtctctgaatttggcttatcacattgtcctcctcaccttcaaatttccaatcacacaaaaaataaacatatcttaat 30304746  T
Q  609 tagattttactcattca 625  Q
    ||| |||| || |||||    
T  30304745 tagctttttcttattca 30304729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 510 - 625
Target Start/End: Complemental strand, 30287177 - 30287061
Alignment:
Q  510 agggaatgctagctctttcactggtctctgaatttggcttatcacattgtcttcctcaccttcaaatttgaaatcaaac-aaaaataaacatatcttaat 608  Q
    ||||||||||| |||||||||||||||||  |||||||||||||||||||| |||||||||||||||||  ||||| || ||||||||||||||||||||    
T  30287177 agggaatgctacctctttcactggtctctctatttggcttatcacattgtcctcctcaccttcaaatttccaatcacacaaaaaataaacatatcttaat 30287078  T
Q  609 tagattttactcattca 625  Q
    ||| |||| || |||||    
T  30287077 tagctttttcttattca 30287061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 510 - 574
Target Start/End: Complemental strand, 30315711 - 30315647
Alignment:
Q  510 agggaatgctagctctttcactggtctctgaatttggcttatcacattgtcttcctcaccttcaa 574  Q
    ||||||||||| |||||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  30315711 agggaatgctacctctttcactggtctctctatttggcttatcacattgtcttcctcaccttcaa 30315647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 175 - 221
Target Start/End: Complemental strand, 30305212 - 30305166
Alignment:
Q  175 caatagaaaagaaaagctgttcatatagtaacatagattagtattat 221  Q
    ||||||||||||||||| |||||||||||| ||||||| | ||||||    
T  30305212 caatagaaaagaaaagcggttcatatagtagcatagatgactattat 30305166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 449 - 489
Target Start/End: Complemental strand, 46810582 - 46810542
Alignment:
Q  449 tccctttgttgaggctgagcatttgcaaagtaagattgtct 489  Q
    |||||||||||||| ||||||||||||||||||||||||||    
T  46810582 tccctttgttgaggttgagcatttgcaaagtaagattgtct 46810542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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