View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3561_low_10 (Length: 253)
Name: NF3561_low_10
Description: NF3561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3561_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 24 - 237
Target Start/End: Original strand, 26245475 - 26245688
Alignment:
| Q |
24 |
gttgcaggcgagtgatagatttaacataaattctcaacttgaacatcttcaagctaaatatgttggaactggtcatgctgatattaacagatttgaatgg |
123 |
Q |
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| T |
26245475 |
gttgcaggcgagtgataggtttaacataaattcgcaacttgaacatcttcaagctaaatacgttggaactggacatgctgatatcaacagatttgaatgg |
26245574 |
T |
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| Q |
124 |
gctgtgaatattcaacgtgatagctatgcttcatacattggccattttcctttactttcttacttttctatcgctcaaaacgaatctattggcagacagc |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
26245575 |
gctgtgaatattcaacgtgatagctatgcttcatacattggccattatcctttactttcttacttttctatcgctcaaaacgaatctattggtagacagc |
26245674 |
T |
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| Q |
224 |
gttacacttttatg |
237 |
Q |
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|||||||||||||| |
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| T |
26245675 |
gttacacttttatg |
26245688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 160; Significance: 2e-85; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 26 - 237
Target Start/End: Complemental strand, 5391039 - 5390828
Alignment:
| Q |
26 |
tgcaggcgagtgatagatttaacataaattctcaacttgaacatcttcaagctaaatatgttggaactggtcatgctgatattaacagatttgaatgggc |
125 |
Q |
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|||||||||||||||| |||||||||||||| ||||| || ||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||| |
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| T |
5391039 |
tgcaggcgagtgataggtttaacataaattcccaactcgagcatctgcaagctaaatatgttggaactggtcatgctgatatcaatagatttgaatgggc |
5390940 |
T |
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| Q |
126 |
tgtgaatattcaacgtgatagctatgcttcatacattggccattttcctttactttcttacttttctatcgctcaaaacgaatctattggcagacagcgt |
225 |
Q |
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| T |
5390939 |
tgtgaatattcaacgtgatagctatgcttcgtatattggccattaccctttactttcttacttttctattgctcaaaacgaatctattggtagacagcgt |
5390840 |
T |
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| Q |
226 |
tacacttttatg |
237 |
Q |
| |
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| T |
5390839 |
tacacttttatg |
5390828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 26 - 237
Target Start/End: Complemental strand, 5395784 - 5395573
Alignment:
| Q |
26 |
tgcaggcgagtgatagatttaacataaattctcaacttgaacatcttcaagctaaatatgttggaactggtcatgctgatattaacagatttgaatgggc |
125 |
Q |
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|||||||||||||||| |||||||||||||| ||||| || ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
5395784 |
tgcaggcgagtgataggtttaacataaattcccaactcgagcatctgcaagctaaatatgttggaactggtcatgctgatatcaacagatttgaatgggc |
5395685 |
T |
|
| Q |
126 |
tgtgaatattcaacgtgatagctatgcttcatacattggccattttcctttactttcttacttttctatcgctcaaaacgaatctattggcagacagcgt |
225 |
Q |
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|||||||||||||||||||||||||||||| || |||||||||| ||||||||||||||||||||||| |||||||| ||||||||||| ||||||||| |
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| T |
5395684 |
tgtgaatattcaacgtgatagctatgcttcgtatattggccattaccctttactttcttacttttctattgctcaaaatgaatctattggtagacagcgt |
5395585 |
T |
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| Q |
226 |
tacacttttatg |
237 |
Q |
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|||||||||||| |
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| T |
5395584 |
tacacttttatg |
5395573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 116
Target Start/End: Complemental strand, 50829825 - 50829736
Alignment:
| Q |
26 |
tgcaggcgagtgatagatttaacataaattctcaacttgaacatcttcaagctaaatatgttggaactggtcatgctgatattaacagatt |
116 |
Q |
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|||||||| ||||||| ||| |||| |||||| |||| || ||||| |||||||||||| ||| |||| | ||| ||||||| |||||||| |
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| T |
50829825 |
tgcaggcg-gtgatagtttttacatcaattcttaactcgagcatctccaagctaaatatattgaaacttgccattctgatatgaacagatt |
50829736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 116
Target Start/End: Original strand, 50846028 - 50846117
Alignment:
| Q |
26 |
tgcaggcgagtgatagatttaacataaattctcaacttgaacatcttcaagctaaatatgttggaactggtcatgctgatattaacagatt |
116 |
Q |
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|||||||| ||||||| ||| |||| |||||| |||| || ||||| |||||||||||| ||| |||| | ||| ||||||| |||||||| |
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| T |
50846028 |
tgcaggcg-gtgatagtttttacatcaattcttaactcgagcatctccaagctaaatatattgaaacttgccattctgatatgaacagatt |
50846117 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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