View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3561_low_3 (Length: 390)

Name: NF3561_low_3
Description: NF3561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3561_low_3
NF3561_low_3
[»] chr2 (4 HSPs)
chr2 (1-374)||(44223032-44223405)
chr2 (4-374)||(44233857-44234227)
chr2 (87-371)||(44210956-44211240)
chr2 (166-372)||(43457590-43457796)
[»] chr4 (3 HSPs)
chr4 (90-374)||(2877126-2877410)
chr4 (94-374)||(2886893-2887173)
chr4 (90-374)||(2897199-2897483)
[»] chr1 (2 HSPs)
chr1 (124-344)||(2160848-2161068)
chr1 (247-347)||(2148988-2149088)
[»] chr7 (10 HSPs)
chr7 (133-376)||(39547487-39547730)
chr7 (157-374)||(39365946-39366163)
chr7 (121-362)||(39589303-39589544)
chr7 (133-376)||(39338591-39338834)
chr7 (148-376)||(39353434-39353662)
chr7 (133-376)||(39564266-39564509)
chr7 (133-338)||(39575077-39575282)
chr7 (133-374)||(39538029-39538270)
chr7 (133-374)||(39622083-39622324)
chr7 (133-235)||(1084823-1084925)
[»] chr3 (2 HSPs)
chr3 (157-353)||(49773102-49773298)
chr3 (210-330)||(25523303-25523423)


Alignment Details
Target: chr2 (Bit Score: 358; Significance: 0; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 1 - 374
Target Start/End: Original strand, 44223032 - 44223405
Alignment:
Q  1 tcatcaataaacatctgcaaccatttgtaatgttcattaagtaaggtcaacaaatgtaaacaaagccacgccgaataaagcacgtgctaactaacctttc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44223032 tcatcaataaacatctgcaaccatttgtaatgttcattaagtaaggtcaacaaatgtaaacaaagccacgccgaataaagcacgtgctaactaacctttc 44223131  T
Q  101 tggtgttggaatcaactcctgaaggtaaacgaagccacgccgaataaagcaaggactcataaactgtaacatgcggtgaatggatatcattctgctcaca 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  44223132 tggtgttggaatcaactcctgaaggtaaacgaagccacgccgaataaagcaaagactcataaactgtaacatgcggtgaatggatatcattctgctcaca 44223231  T
Q  201 gtagccagaaattctagcaaatgtttcttgctttttagggtacccagataccttgatgtctccatcaatatatccacctgttttcctcccagccagaaca 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  44223232 gtagccagaaattctagcaaatgtttcttgctttttagggtacccagaaaccttgatgtctccatcaatatatccacctgttttcctaccagccagaaca 44223331  T
Q  301 tccatcagagttgttttaccagctccacttacacccatcaaagctgtgagaaccccgggcctgaatgcaccact 374  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  44223332 tccatcagagttgttttaccagctccacttacacccatcaaagctgtgagaacaccgggcctgaatgcaccact 44223405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 4 - 374
Target Start/End: Original strand, 44233857 - 44234227
Alignment:
Q  4 tcaataaacatctgcaaccatttgtaatgttcattaagtaaggtcaacaaatgtaaacaaagccacgccgaataaagcacgtgctaactaacctttctgg 103  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||| || |||||||||||||||||||||||| || || |||||||||||||||||    
T  44233857 tcaataaacatctgcaaccatttgtaatgttcattaagtaaggtaaacgaaggtaaacaaagccacgccgaataaaccatgtactaactaacctttctgg 44233956  T
Q  104 tgttggaatcaactcctgaaggtaaacgaagccacgccgaataaagcaaggactcataaactgtaacatgcggtgaatggatatcattctgctcacagta 203  Q
    ||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||    
T  44233957 tgttggaatcaactcctgaaggtaaacgaagccacgctgagtaaagcaaagactcataaactgtaacatgaggtgaatggatatcattctgctcacagta 44234056  T
Q  204 gccagaaattctagcaaatgtttcttgctttttagggtacccagataccttgatgtctccatcaatatatccacctgttttcctcccagccagaacatcc 303  Q
     || || ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  44234057 accggagattctagcaaatgtttcttgctttttaggatacccagaaaccttgatgtctccatcaatatatccacctgttttcctaccagccagaacatcc 44234156  T
Q  304 atcagagttgttttaccagctccacttacacccatcaaagctgtgagaaccccgggcctgaatgcaccact 374  Q
    ||||||||||||||||||||||||||||||||||||||||| || || || || ||||||||||| |||||    
T  44234157 atcagagttgttttaccagctccacttacacccatcaaagccgtaagtacaccaggcctgaatgcgccact 44234227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 87 - 371
Target Start/End: Original strand, 44210956 - 44211240
Alignment:
Q  87 ctaactaacctttctggtgttggaatcaactcctgaaggtaaacgaagccacgccgaataaagcaaggactcataaactgtaacatgcggtgaatggata 186  Q
    ||||||||||||||| || |||||||||||||| ||||||||||||||||| || || ||||| | ||| ||||||||||||||||| |||||||| |||    
T  44210956 ctaactaacctttctagtattggaatcaactccagaaggtaaacgaagccatgctgagtaaagaagggattcataaactgtaacatgaggtgaatgaata 44211055  T
Q  187 tcattctgctcacagtagccagaaattctagcaaatgtttcttgctttttagggtacccagataccttgatgtctccatcaatatatccacctgttttcc 286  Q
    |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  44211056 tcattctgttcacagtagccagatattctagcaaatgtttcttgctttttagggtacccagaaaccttgatgtctccatcaatatatccacctgttttcc 44211155  T
Q  287 tcccagccagaacatccatcagagttgttttaccagctccacttacacccatcaaagctgtgagaaccccgggcctgaatgcacc 371  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  44211156 taccagccagaacatccatcagagttgttttaccagctccacttacacccatcaaagctgtgagaacaccgggcctgaatgcacc 44211240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 166 - 372
Target Start/End: Original strand, 43457590 - 43457796
Alignment:
Q  166 gtaacatgcggtgaatggatatcattctgctcacagtagccagaaattctagcaaatgtttcttgctttttagggtacccagataccttgatgtctccat 265  Q
    ||||| || ||||||||||||||  | || || ||||| ||||||||||| |||||||||||||| || |||||| | ||||| |   | |  ||||| |    
T  43457590 gtaacttgtggtgaatggatatcggtttgttcgcagtatccagaaattcttgcaaatgtttcttgattcttagggaagccagagattctaacatctcctt 43457689  T
Q  266 caatatatccacctgttttcctcccagccagaacatccatcagagttgttttaccagctccacttacacccatcaaagctgtgagaaccccgggcctgaa 365  Q
    |||| || |||||||| ||||| ||||| | ||||||||||| |||||| || ||||||||||| || ||||| ||||| || ||||| || ||||||||    
T  43457690 caatgtaaccacctgtcttccttccagctaaaacatccatcaaagttgtctttccagctccactaactcccattaaagccgttagaactccaggcctgaa 43457789  T
Q  366 tgcacca 372  Q
    |||||||    
T  43457790 tgcacca 43457796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 137; Significance: 2e-71; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 90 - 374
Target Start/End: Complemental strand, 2877410 - 2877126
Alignment:
Q  90 actaacctttctggtgttggaatcaactcctgaaggtaaacgaagccacgccgaataaagcaaggactcataaactgtaacatgcggtgaatggatatca 189  Q
    ||||||||||||||| |||||||||||| |||  |||||||||||||| || ||||| || ||||||||||| || ||||| || || || |||||||||    
T  2877410 actaacctttctggtattggaatcaacttctgccggtaaacgaagccaagctgaatacagtaaggactcatagacagtaacttgaggggagtggatatca 2877311  T
Q  190 ttctgctcacagtagccagaaattctagcaaatgtttcttgctttttagggtacccagataccttgatgtctccatcaatatatccacctgttttcctcc 289  Q
    ||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||| |  || |||   ||||||||||| ||||  |||||||| |    
T  2877310 ttctgctcacaatagccagagattctagcaaatgtttcttgctttttagggtaaccagaaatttttatgctcccatcaatataaccactagttttcctac 2877211  T
Q  290 cagccagaacatccatcagagttgttttaccagctccacttacacccatcaaagctgtgagaaccccgggcctgaatgcaccact 374  Q
    ||||||  |||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||| || || || |||||||||||    
T  2877210 cagccaatacatccatcaaagtagttttaccagctccactaacacccatcaaagctgtgagaacaccaggtctaaatgcaccact 2877126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 94 - 374
Target Start/End: Complemental strand, 2887173 - 2886893
Alignment:
Q  94 acctttctggtgttggaatcaactcctgaaggtaaacgaagccacgccgaataaagcaaggactcataaactgtaacatgcggtgaatggatatcattct 193  Q
    ||||||||||| || ||||||||  |||  |||||||||||||| ||||| || | ||  |||||||| || |||||||| || ||||||||||||||||    
T  2887173 acctttctggtatttgaatcaacgtctgctggtaaacgaagccaggccgagtagaccagtgactcatagacagtaacatgaggagaatggatatcattct 2887074  T
Q  194 gctcacagtagccagaaattctagcaaatgtttcttgctttttagggtacccagataccttgatgtctccatcaatatatccacctgttttcctcccagc 293  Q
    ||||||| || ||||| |||| |||||| |||||||| ||||||||||||||||| |  || |||   || |||||||| ||||| |||||||| |||||    
T  2887073 gctcacaataaccagagattcgagcaaacgtttcttgttttttagggtacccagaaatttttatgctcccgtcaatataaccaccagttttcctaccagc 2886974  T
Q  294 cagaacatccatcagagttgttttaccagctccacttacacccatcaaagctgtgagaaccccgggcctgaatgcaccact 374  Q
    || ||||||||| | ||| ||||||||||||||||| || ||||| || ||||||||||| || ||||| |||||||||||    
T  2886973 caaaacatccattaaagtagttttaccagctccactaactcccattaaggctgtgagaacaccaggcctaaatgcaccact 2886893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 90 - 374
Target Start/End: Original strand, 2897199 - 2897483
Alignment:
Q  90 actaacctttctggtgttggaatcaactcctgaaggtaaacgaagccacgccgaataaagcaaggactcataaactgtaacatgcggtgaatggatatca 189  Q
    ||||||||||||||  |||||||||||| |||  |||||||||||||| ||||| || | ||  |||||||| || |||||||| || ||||||||||||    
T  2897199 actaacctttctggaattggaatcaacttctgctggtaaacgaagccaggccgagtagaccattgactcatagacagtaacatgaggagaatggatatca 2897298  T
Q  190 ttctgctcacagtagccagaaattctagcaaatgtttcttgctttttagggtacccagataccttgatgtctccatcaatatatccacctgttttcctcc 289  Q
    ||||||||||| || ||||| |||| |||||| ||||||||  ||||| |||| || || |  || |||   ||||| ||||| ||||| ||||| || |    
T  2897299 ttctgctcacaataaccagagattcgagcaaacgtttcttgtcttttaaggtagcctgaaatttttatggtgccatcgatataaccaccggtttttctac 2897398  T
Q  290 cagccagaacatccatcagagttgttttaccagctccacttacacccatcaaagctgtgagaaccccgggcctgaatgcaccact 374  Q
    |||||| ||||||||| | ||| ||||||||||||||||| || ||||| || ||||||||||| || ||||| |||||||||||    
T  2897399 cagccaaaacatccattaaagtagttttaccagctccactaactcccattaatgctgtgagaacaccaggcctaaatgcaccact 2897483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 7e-31; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 124 - 344
Target Start/End: Original strand, 2160848 - 2161068
Alignment:
Q  124 ggtaaacgaagccacgccgaataaagcaaggactcataaactgtaacatgcggtgaatggatatcattctgctcacagtagccagaaattctagcaaatg 223  Q
    |||||||||||||| |||||||| | ||| || ||||||||||||||||  |||||||||||||||   ||||| || || || || || | ||||||||    
T  2160848 ggtaaacgaagccatgccgaatataacaaagattcataaactgtaacattaggtgaatggatatcaaattgctcgcaatatcccgatatgcgagcaaatg 2160947  T
Q  224 tttcttgctttttagggtacccagataccttgatgtctccatcaatatatccacctgttttcctcccagccagaacatccatcagagttgttttaccagc 323  Q
    ||| ||| || || || || || ||||   |||||| |||||||||||||||||| |||||||| ||||| | ||||||||| ||||| || || || ||    
T  2160948 ttttttgattctttggatagccggatattgtgatgtttccatcaatatatccaccagttttccttccagctaaaacatccattagagtagtctttccggc 2161047  T
Q  324 tccacttacacccatcaaagc 344  Q
     ||||||||||||||||||||    
T  2161048 accacttacacccatcaaagc 2161068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 347
Target Start/End: Original strand, 2148988 - 2149088
Alignment:
Q  247 gataccttgatgtctccatcaatatatccacctgttttcctcccagccagaacatccatcagagttgttttaccagctccacttacacccatcaaagctg 346  Q
    ||||| ||||||| ||| ||||| |||||||  |||||  | ||||| | ||||||||| | ||| || || ||||| ||||||||||||||||||||||    
T  2148988 gatactttgatgtttccttcaatgtatccactagtttttattccagctaaaacatccattaaagtagtctttccagcaccacttacacccatcaaagctg 2149087  T
Q  347 t 347  Q
    |    
T  2149088 t 2149088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 68; Significance: 3e-30; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 133 - 376
Target Start/End: Original strand, 39547487 - 39547730
Alignment:
Q  133 agccacgccgaataaagcaaggactcataaactgtaacatgcggtgaatggatatcattctgctcacagtagccagaaattctagcaaatgtttcttgct 232  Q
    ||||| || ||||| ||||| || ||||| || |||||||| || |||||||||||| | ||||||||||| || |||||||| ||||| || |||||||    
T  39547487 agccatgctgaatagagcaaagattcatagacagtaacatgaggagaatggatatcagtttgctcacagtatcctgaaattcttgcaaaggtatcttgct 39547586  T
Q  233 ttttagggtacccagataccttgatgtctccatcaatatatccacctgttttcctcccagccagaacatccatcagagttgttttaccagctccacttac 332  Q
    | || || || |||||||   ||||||  ||| ||||||||||||| ||||| || ||||  || |||||||||||||||||||| || || ||| | ||    
T  39547587 tctttggatagccagatattgtgatgttcccaccaatatatccaccagtttttctaccagaaagtacatccatcagagttgttttgcctgcaccagtcac 39547686  T
Q  333 acccatcaaagctgtgagaaccccgggcctgaatgcaccactta 376  Q
    |||||||| ||| |||||||| || || ||||| || |||||||    
T  39547687 acccatcagagcagtgagaacaccaggtctgaaagctccactta 39547730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 157 - 374
Target Start/End: Complemental strand, 39366163 - 39365946
Alignment:
Q  157 tcataaactgtaacatgcggtgaatggatatcattctgctcacagtagccagaaattctagcaaatgtttcttgctttttagggtacccagataccttga 256  Q
    ||||| || |||||||| || |||||||||||| | ||||| ||||| ||||||||||| ||||| ||||||||||| || || || |||||||   |||    
T  39366163 tcatagacagtaacatgaggagaatggatatcagtttgctcgcagtatccagaaattcttgcaaaggtttcttgcttctttggatagccagatattgtga 39366064  T
Q  257 tgtctccatcaatatatccacctgttttcctcccagccagaacatccatcagagttgttttaccagctccacttacacccatcaaagctgtgagaacccc 356  Q
    |||  ||| ||||||||||||| ||||| || ||||  || |||||||||||||||||||| ||||| ||  | |||||||||| ||| |||||||| ||    
T  39366063 tgttcccaccaatatatccaccagtttttctaccagaaagcacatccatcagagttgttttgccagcaccggtcacacccatcagagccgtgagaacacc 39365964  T
Q  357 gggcctgaatgcaccact 374  Q
     || ||||| || |||||    
T  39365963 tggtctgaaagctccact 39365946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 121 - 362
Target Start/End: Original strand, 39589303 - 39589544
Alignment:
Q  121 gaaggtaaacgaagccacgccgaataaagcaaggactcataaactgtaacatgcggtgaatggatatcattctgctcacagtagccagaaattctagcaa 220  Q
    ||||| || |||||||| || ||||| ||||| || ||||| || |||||||| || || ||||||||||| ||||||||||| ||||||||||| ||||    
T  39589303 gaaggcaatcgaagccatgctgaatagagcaaagattcatatacagtaacatgaggagagtggatatcattttgctcacagtatccagaaattcttgcaa 39589402  T
Q  221 atgtttcttgctttttagggtacccagataccttgatgtctccatcaatatatccacctgttttcctcccagccagaacatccatcagagttgttttacc 320  Q
    ||||||||||||| ||||| || ||||| |   |||||   ||| ||||||||||||| ||||| || ||||  || ||||||| || ||| ||||| ||    
T  39589403 atgtttcttgcttcttaggatatccagaaattgtgatggtcccaccaatatatccaccagtttttctaccagaaagcacatccaacaaagtagtttttcc 39589502  T
Q  321 agctccacttacacccatcaaagctgtgagaaccccgggcct 362  Q
    ||| ||  | || ||||| ||||| |||||||| || |||||    
T  39589503 agcacccgtgacgcccattaaagcagtgagaacaccaggcct 39589544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 133 - 376
Target Start/End: Complemental strand, 39338834 - 39338591
Alignment:
Q  133 agccacgccgaataaagcaaggactcataaactgtaacatgcggtgaatggatatcattctgctcacagtagccagaaattctagcaaatgtttcttgct 232  Q
    ||||| || ||||| ||||| || ||||| || |||||||| || |||||||||||| | ||||||||||| ||||||||||| ||||| ||||||||||    
T  39338834 agccatgctgaatagagcaaagattcatagacagtaacatgaggagaatggatatcagtttgctcacagtatccagaaattcttgcaaaggtttcttgct 39338735  T
Q  233 ttttagggtacccagataccttgatgtctccatcaatatatccacctgttttcctcccagccagaacatccatcagagttgttttaccagctccacttac 332  Q
    | || ||  | || || |  |||||||  ||| ||||||||||||| ||||| || ||||  || |||||||||||||||||||| ||||| ||  | |     
T  39338734 tctttggaaagccggaaattttgatgttcccaccaatatatccaccagtttttctaccagaaagcacatccatcagagttgttttcccagcaccggtgat 39338635  T
Q  333 acccatcaaagctgtgagaaccccgggcctgaatgcaccactta 376  Q
     ||||||| ||| |||||||| || || ||||| || |||||||    
T  39338634 gcccatcagagcggtgagaacacctggtctgaaagctccactta 39338591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 148 - 376
Target Start/End: Complemental strand, 39353662 - 39353434
Alignment:
Q  148 agcaaggactcataaactgtaacatgcggtgaatggatatcattctgctcacagtagccagaaattctagcaaatgtttcttgctttttagggtacccag 247  Q
    ||||| || ||||| || |||||||  || |||||||||||| | ||||||||||| ||||||||||| ||||| |||||||||||||| || || || |    
T  39353662 agcaaagattcatagacagtaacataaggagaatggatatcagtttgctcacagtatccagaaattcttgcaaaggtttcttgcttttttggatagccgg 39353563  T
Q  248 ataccttgatgtctccatcaatatatccacctgttttcctcccagccagaacatccatcagagttgttttaccagctccacttacacccatcaaagctgt 347  Q
    | |   ||||||  ||| ||||||||||||| ||||| || ||||  || |||||||| ||||||||||| ||||| ||| | |  ||||||| ||| ||    
T  39353562 aaattgtgatgttcccaccaatatatccaccggtttttctaccagaaagcacatccattagagttgtttttccagcaccagtgatgcccatcagagccgt 39353463  T
Q  348 gagaaccccgggcctgaatgcaccactta 376  Q
    |||||| || || ||||| || |||||||    
T  39353462 gagaacacctggtctgaaagctccactta 39353434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 133 - 376
Target Start/End: Original strand, 39564266 - 39564509
Alignment:
Q  133 agccacgccgaataaagcaaggactcataaactgtaacatgcggtgaatggatatcattctgctcacagtagccagaaattctagcaaatgtttcttgct 232  Q
    ||||| || ||||| ||||| || ||||| || |||||||  || || ||||||||||| ||||||||||| ||||||||||| ||||| ||||||||||    
T  39564266 agccatgctgaatagagcaaagattcatagacagtaacataaggagagtggatatcattttgctcacagtacccagaaattcttgcaaaggtttcttgct 39564365  T
Q  233 ttttagggtacccagataccttgatgtctccatcaatatatccacctgttttcctcccagccagaacatccatcagagttgttttaccagctccacttac 332  Q
    | || ||  | || || |   ||||||  ||| |||||||||| || |||||||| ||||  || |||||||||||||||||||| ||||| ||  | ||    
T  39564366 tctttggaaagccggaaattgtgatgttcccaccaatatatcctccggttttcctaccagaaagcacatccatcagagttgttttgccagcaccggtcac 39564465  T
Q  333 acccatcaaagctgtgagaaccccgggcctgaatgcaccactta 376  Q
    |||||| | ||| |||||||| || || ||||| || |||||||    
T  39564466 acccattagagcagtgagaacaccaggtctgaaagctccactta 39564509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 133 - 338
Target Start/End: Original strand, 39575077 - 39575282
Alignment:
Q  133 agccacgccgaataaagcaaggactcataaactgtaacatgcggtgaatggatatcattctgctcacagtagccagaaattctagcaaatgtttcttgct 232  Q
    ||||| || ||||| ||||| |||||||| || |||| ||| || || || |||||||| ||||||||||| || |||||||| ||||| ||||||||||    
T  39575077 agccatgctgaatagagcaaagactcatagaccgtaatatgaggagagtgtatatcattttgctcacagtatccggaaattcttgcaaaggtttcttgct 39575176  T
Q  233 ttttagggtacccagataccttgatgtctccatcaatatatccacctgttttcctcccagccagaacatccatcagagttgttttaccagctccacttac 332  Q
    |||| || | ||| || ||  ||||||  |||  ||||||||| ||  ||||||| ||||| || |||||||||| ||||||||| ||||| ||| | ||    
T  39575177 ttttgggatgcccggaaactgtgatgttcccactaatatatcccccacttttcctaccagcaagtacatccatcaaagttgttttgccagcaccagtgac 39575276  T
Q  333 acccat 338  Q
    ||||||    
T  39575277 acccat 39575282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 133 - 374
Target Start/End: Original strand, 39538029 - 39538270
Alignment:
Q  133 agccacgccgaataaagcaaggactcataaactgtaacatgcggtgaatggatatcattctgctcacagtagccagaaattctagcaaatgtttcttgct 232  Q
    ||||| || ||||| ||||| || ||||| || |||||||  || |||||||||||| | ||||||||||| || |||||||| ||||| || |||||||    
T  39538029 agccatgctgaatagagcaaagattcatagacagtaacataaggagaatggatatcagtttgctcacagtatcctgaaattcttgcaaaggtatcttgct 39538128  T
Q  233 ttttagggtacccagataccttgatgtctccatcaatatatccacctgttttcctcccagccagaacatccatcagagttgttttaccagctccacttac 332  Q
    | || || || ||||| |   ||||||  ||| ||||||||||||| ||||| || ||||  || |||||||||||||||||||| || || ||  | ||    
T  39538129 tctttggatagccagaaattgtgatgttcccaccaatatatccaccagtttttctaccagaaagcacatccatcagagttgttttgcctgcacccgtgac 39538228  T
Q  333 acccatcaaagctgtgagaaccccgggcctgaatgcaccact 374  Q
     ||||||| ||| |||||||| || || ||||| || |||||    
T  39538229 gcccatcagagcagtgagaacacctggtctgaaagctccact 39538270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 133 - 374
Target Start/End: Original strand, 39622083 - 39622324
Alignment:
Q  133 agccacgccgaataaagcaaggactcataaactgtaacatgcggtgaatggatatcattctgctcacagtagccagaaattctagcaaatgtttcttgct 232  Q
    ||||| |||||| | ||||| || ||||| || |||||||  || |||||||||| ||| || |||||||| ||| ||| ||| ||||| ||||| ||||    
T  39622083 agccatgccgaaaagagcaatgattcatatacagtaacataaggagaatggatataattttgttcacagtatccacaaactcttgcaaaggtttcctgct 39622182  T
Q  233 ttttagggtacccagataccttgatgtctccatcaatatatccacctgttttcctcccagccagaacatccatcagagttgttttaccagctccacttac 332  Q
    | || |  || ||||| |   |||||   ||| |||||||||| |  ||||| || ||||| || |||||||||||||||||||| ||||| ||| | ||    
T  39622183 tctttgaatagccagaaattgtgatggtcccaccaatatatcctctggtttttcttccagctagtacatccatcagagttgttttgccagcaccagtcac 39622282  T
Q  333 acccatcaaagctgtgagaaccccgggcctgaatgcaccact 374  Q
    |||||||| ||||||||||||  | || ||||||| ||||||    
T  39622283 acccatcagagctgtgagaacagccggtctgaatgaaccact 39622324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 133 - 235
Target Start/End: Original strand, 1084823 - 1084925
Alignment:
Q  133 agccacgccgaataaagcaaggactcataaactgtaacatgcggtgaatggatatcattctgctcacagtagccagaaattctagcaaatgtttcttgct 232  Q
    ||||| || ||||| ||||| ||||| || || |||| ||| || |||||||||||  | ||||||||||| ||||||||||| | ||||||||||||||    
T  1084823 agccatgctgaatagagcaaagactcgtagacagtaaaatgaggagaatggatatctatttgctcacagtatccagaaattcttgtaaatgtttcttgct 1084922  T
Q  233 ttt 235  Q
    |||    
T  1084923 ttt 1084925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 157 - 353
Target Start/End: Complemental strand, 49773298 - 49773102
Alignment:
Q  157 tcataaactgtaacatgcggtgaatggatatcattctgctcacagtagccagaaattctagcaaatgtttcttgctttttagggtacccagataccttga 256  Q
    ||||| || |||||||| || || ||||||||| | ||||||||||| || || || | || ||||||||||||||| ||||||||||| ||||   |||    
T  49773298 tcatagacagtaacatggggagagtggatatcagtttgctcacagtatcctgatatccgagaaaatgtttcttgcttcttagggtacccggatatagtga 49773199  T
Q  257 tgtctccatcaatatatccacctgttttcctcccagccagaacatccatcagagttgttttaccagctccacttacacccatcaaagctgtgagaac 353  Q
    | | ||| | || ||||||   ||||||||| |||| ||| |||||||| ||||||||||||||||||||||||| |||||| | |||||| |||||    
T  49773198 tttgtccttgaacatatcctgttgttttccttccagacagcacatccattagagttgttttaccagctccacttatacccattagagctgtcagaac 49773102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 210 - 330
Target Start/End: Original strand, 25523303 - 25523423
Alignment:
Q  210 aattctagcaaatgtttcttgctttttagggtacccagataccttgatgtctccatcaatatatccacctgttttcctcccagccagaacatccatcaga 309  Q
    |||||| ||||||||  |||||  ||| || || |||||||  || || ||||| || |||||||| ||||||||||| || || || |||||||| | |    
T  25523303 aattctggcaaatgtggcttgcacttttggataaccagatattttaatatctccctcgatatatcctcctgttttccttcctgcaagcacatccattaaa 25523402  T
Q  310 gttgttttaccagctccactt 330  Q
    || ||||| ||||||||||||    
T  25523403 gtggttttcccagctccactt 25523423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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