View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3561_low_4 (Length: 332)
Name: NF3561_low_4
Description: NF3561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3561_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 166; Significance: 8e-89; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 16 - 197
Target Start/End: Complemental strand, 9395074 - 9394893
Alignment:
| Q |
16 |
gaaccttctttattatgcagtctagtataaagtgctatgaaaggctcacctaattactcatagcttagggatacaaacaagctcattatgatcattcatt |
115 |
Q |
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| T |
9395074 |
gaaccttctttattatgcagtctagtataaagtgctatgaaaggctgacctaattactcatagcttagggatacaaacaagcgcattatgatcattcatt |
9394975 |
T |
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| Q |
116 |
tttcaacaagaaagaattttagctggcaattgcttgactagattcacccacatcaaggatatacttaagaattcttttcaaa |
197 |
Q |
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| T |
9394974 |
tttcaacaagaaagaattttagctggcaattgcttgattagattcacccacatcaaggatatccttaagaattcttttcaaa |
9394893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 196 - 314
Target Start/End: Complemental strand, 9394871 - 9394753
Alignment:
| Q |
196 |
aagtattccttagccctaagtttcaagatcagagaagatcatttggctttgttagagaaaataatgtgtatatttcttgactgatagtgaacatttgagc |
295 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
9394871 |
aagtattccttagccctaagttccaagatcagagaagatcatttcgctttgttagagaaaataatgtgtatatttcttgactgatagtgaatatttgagc |
9394772 |
T |
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| Q |
296 |
tacaaacctatcaatacac |
314 |
Q |
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| T |
9394771 |
tacaaacctatcaatacac |
9394753 |
T |
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