View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3562_high_11 (Length: 303)

Name: NF3562_high_11
Description: NF3562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3562_high_11
NF3562_high_11
[»] chr4 (13 HSPs)
chr4 (1-284)||(35968315-35968598)
chr4 (20-284)||(36636764-36637028)
chr4 (70-284)||(35974013-35974234)
chr4 (55-282)||(36668462-36668689)
chr4 (76-261)||(29676509-29676694)
chr4 (20-247)||(36656238-36656465)
chr4 (34-247)||(36909585-36909798)
chr4 (20-252)||(36643459-36643691)
chr4 (166-284)||(38863118-38863236)
chr4 (50-147)||(36607408-36607505)
chr4 (187-249)||(18364242-18364304)
chr4 (187-249)||(36598621-36598683)
chr4 (223-263)||(52186852-52186892)
[»] chr5 (2 HSPs)
chr5 (32-284)||(19658172-19658424)
chr5 (32-284)||(19675011-19675263)
[»] chr1 (1 HSPs)
chr1 (20-253)||(42602701-42602934)
[»] chr8 (1 HSPs)
chr8 (191-284)||(35335853-35335946)
[»] chr6 (3 HSPs)
chr6 (202-253)||(33844282-33844333)
chr6 (112-147)||(33840194-33840229)
chr6 (112-147)||(33844186-33844221)
[»] chr2 (2 HSPs)
chr2 (223-263)||(43875239-43875279)
chr2 (223-263)||(43864072-43864112)
[»] chr3 (2 HSPs)
chr3 (82-141)||(25597049-25597108)
chr3 (33-147)||(25601848-25601962)


Alignment Details
Target: chr4 (Bit Score: 280; Significance: 1e-157; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 35968598 - 35968315
Alignment:
Q  1 ttctaattccttaacgtgtgtattattggaccaaacatagtctaaaaccttttcaaggagttgagactcaatattaccatgacggtcaatatcaagagct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35968598 ttctaattccttaacgtgtgtattattggaccaaacatagtctaaaaccttttcaaggagttgagactcaatattaccatgacggtcaatatcaagagct 35968499  T
Q  101 tgcagtggaattgaggtatcacgaagagtcaaaatcttagacacgaacatggcaaattgcttcggagtggaaaaacttgaagcatacaacataagagttg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35968498 tgcagtggaattgaggtatcacgaagagtcaaaatcttagacacgaacatggcaaattgcttcggagtggaaaaacttgaagcatacaacataagagttg 35968399  T
Q  201 aaatacgtttccagagatgttcccatcttttggacaaaacgcaagtttgaacgacctgttttgtatccaatagtgacaaaatgt 284  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  35968398 aaatacgtttccagagatgttcccatcttttggacaaaacgcaagtttgaacgacctgttttgtatccaataatgacaaaatgt 35968315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 20 - 284
Target Start/End: Original strand, 36636764 - 36637028
Alignment:
Q  20 gtattattggaccaaacatagtctaaaaccttttcaaggagttgagactcaatattaccatgacggtcaatatcaagagcttgcagtggaattgaggtat 119  Q
    ||||||| |||  ||||||||| ||||| ||||| ||||||||||| |||||| |||||||||||||||| ||||||||| ||||||| | |||||||||    
T  36636764 gtattatgggaggaaacatagtttaaaatctttttaaggagttgaggctcaatgttaccatgacggtcaagatcaagagcgtgcagtgcagttgaggtat 36636863  T
Q  120 cacgaagagtcaaaatcttagacacgaacatggcaaattgcttcggagtggaaaaacttgaagcatacaacataagagttgaaatacgtttccagagatg 219  Q
    ||||||||||||| || |||||||| |||||||||||||||||   ||||||||| ||||| ||||||||||||||||||| ||||||||||||||||||    
T  36636864 cacgaagagtcaatatgttagacacaaacatggcaaattgcttaacagtggaaaatcttgatgcatacaacataagagttggaatacgtttccagagatg 36636963  T
Q  220 ttcccatcttttggacaaaacgcaagtttgaacgacctgttttgtatccaatagtgacaaaatgt 284  Q
    |  |||||| || |||||||| ||||||   || || ||||| |||| ||| | |||||||||||    
T  36636964 tctccatctcttagacaaaacacaagttctgacaacatgtttggtattcaaaaatgacaaaatgt 36637028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 70 - 284
Target Start/End: Complemental strand, 35974234 - 35974013
Alignment:
Q  70 aatattaccatgacggtcaatatcaagagcttgcagtggaattgaggtatcacgaagagtcaaaatcttagacacgaacatggcaaattgcttcggagtg 169  Q
    ||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||  |||||    
T  35974234 aatattaccatgacggttaatatcaatagcttgcagtgcaattgaggtatcacgaagagtcaaaatcttatacacgaatatggcaaattgcttacgagtg 35974135  T
Q  170 gaaaaacttgaagcatacaacataagag-------ttgaaatacgtttccagagatgttcccatcttttggacaaaacgcaagtttgaacgacctgtttt 262  Q
    ||||| || |||||||||||| ||||||       ||| |||||||||||||||||||  ||||||| |||||||||  ||| |||||||| ||||||||    
T  35974134 gaaaagctggaagcatacaacttaagagttggaacttggaatacgtttccagagatgtctccatcttgtggacaaaatacaactttgaacggcctgtttt 35974035  T
Q  263 gtatccaatagtgacaaaatgt 284  Q
    ||||| || | |||||||||||    
T  35974034 gtatcgaacaatgacaaaatgt 35974013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 55 - 282
Target Start/End: Original strand, 36668462 - 36668689
Alignment:
Q  55 aaggagttgagactcaatattaccatgacggtcaatatcaagagcttgcagtggaattgaggtatcacgaagagtcaaaatcttagacacgaacatggca 154  Q
    ||||||| |||  |||| |||||||| |||||||| ||||||| |  ||| || | ||||| |||||||||||||||||||||||||||| ||  | | |    
T  36668462 aaggagtcgaggttcaaaattaccattacggtcaacatcaagaacgcgcaatgcagttgagctatcacgaagagtcaaaatcttagacacaaatgttgta 36668561  T
Q  155 aattgcttcggagtggaaaaacttgaagcatacaacataagagttgaaatacgtttccagagatgttcccatcttttggacaaaacgcaagtttgaacga 254  Q
    ||||||||   |  |||||| || |||| || ||| ||||| |||||||||||||||||||||||||||||||| || |||||||| ||||||   || |    
T  36668562 aattgcttaacataggaaaatctagaagaatgcaatataagggttgaaatacgtttccagagatgttcccatctctttgacaaaacacaagttctcacaa 36668661  T
Q  255 cctgttttgtatccaatagtgacaaaat 282  Q
    |||||||||||||||||| |||||||||    
T  36668662 cctgttttgtatccaataatgacaaaat 36668689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 76 - 261
Target Start/End: Complemental strand, 29676694 - 29676509
Alignment:
Q  76 accatgacggtcaatatcaagagcttgcagtggaattgaggtatcacgaagagtcaaaatcttagacacgaacatggcaaattgcttcggagtggaaaaa 175  Q
    |||| |||||| || |||||||||| |||||| | | ||||||||||||||||||||||| ||||| |||||  ||| |||||| ||  |||||| |||     
T  29676694 accaggacggtgaagatcaagagctagcagtgcagtcgaggtatcacgaagagtcaaaattttagagacgaatttggaaaattgtttaagagtggcaaat 29676595  T
Q  176 cttgaagcatacaacataagagttgaaatacgtttccagagatgttcccatcttttggacaaaacgcaagtttgaacgacctgttt 261  Q
     ||||||| | ||| ||||||||||  ||| ||||||||||||||||  |||| |||||||||| ||||||||||||||| |||||    
T  29676594 gttgaagcttgcaaaataagagttgggatatgtttccagagatgttcatatctcttggacaaaatgcaagtttgaacgacgtgttt 29676509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 20 - 247
Target Start/End: Original strand, 36656238 - 36656465
Alignment:
Q  20 gtattattggaccaaacatagtctaaaaccttttcaaggagttgagactcaatattaccatgacggtcaatatcaagagcttgcagtggaattgaggtat 119  Q
    ||||||| ||| ||||||||||||||||| |||| ||| ||||||| |||||| | |||  ||||||||| ||||| ||| |||| || | |||||||||    
T  36656238 gtattatgggagcaaacatagtctaaaacatttttaagaagttgaggctcaatctcacctcgacggtcaagatcaaaagcctgcattgcagttgaggtat 36656337  T
Q  120 cacgaagagtcaaaatcttagacacgaacatggcaaattgcttcggagtggaaaaacttgaagcatacaacataagagttgaaatacgtttccagagatg 219  Q
    | ||||||||||| |||||||| ||||| ||| |||| | || |  | ||||||| ||||| | ||  ||  |||| || | | ||||||||||||||||    
T  36656338 ctcgaagagtcaatatcttagaaacgaatatgtcaaaattctccacattggaaaatcttgaggaatgtaatgtaagggtaggattacgtttccagagatg 36656437  T
Q  220 ttcccatcttttggacaaaacgcaagtt 247  Q
    || |||||| |||||||| |||||||||    
T  36656438 tttccatctcttggacaacacgcaagtt 36656465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 34 - 247
Target Start/End: Complemental strand, 36909798 - 36909585
Alignment:
Q  34 aacatagtctaaaaccttttcaaggagttgagactcaatattaccatgacggtcaatatcaagagcttgcagtggaattgaggtatcacgaagagtcaaa 133  Q
    |||||||| ||||| ||||| ||||||||||| |||||||| |||| | ||||||| ||||||    |||||||   |||| ||||   | |||||||||    
T  36909798 aacatagtttaaaatctttttaaggagttgaggctcaatatcaccacggcggtcaagatcaagtttgtgcagtgcggttgaagtatggtggagagtcaaa 36909699  T
Q  134 atcttagacacgaacatggcaaattgcttcggagtggaaaaacttgaagcatacaacataagagttgaaatacgtttccagagatgttcccatcttttgg 233  Q
    ||||||||||||||  | | |||||||||   ||||||||| ||||||| ||  ||||||||||||| ||| || |||||||||||| ||||||| ||||    
T  36909698 atcttagacacgaatgttgtaaattgcttaatagtggaaaatcttgaagaatgtaacataagagttggaattcgcttccagagatgtccccatctcttgg 36909599  T
Q  234 acaaaacgcaagtt 247  Q
    | ||||| ||||||    
T  36909598 aaaaaacacaagtt 36909585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 20 - 252
Target Start/End: Original strand, 36643459 - 36643691
Alignment:
Q  20 gtattattggaccaaacatagtctaaaaccttttcaaggagttgagactcaatattaccatgacggtcaatatcaagagcttgcagtggaattgaggtat 119  Q
    ||||||| ||| |||| ||| | ||||| ||||| |||||||||||  ||||||| |||| |||| |||| ||  ||||||||||| | | ||||| |||    
T  36643459 gtattatgggagcaaatataatttaaaatctttttaaggagttgaggttcaatatcaccacgacgatcaagattgagagcttgcagagaagttgagctat 36643558  T
Q  120 cacgaagagtcaaaatcttagacacgaacatggcaaattgcttcggagtggaaaaacttgaagcatacaacataagagttgaaatacgtttccagagatg 219  Q
      |||||||||||||| ||||||||||| |||||||||| |||   ||| |||||  |||| | ||  || ||||| || | |||||||  ||| |||||    
T  36643559 tgcgaagagtcaaaatgttagacacgaatatggcaaatttcttgacagttgaaaagtttgaggaatgtaatataagggtaggaatacgtgcccaaagatg 36643658  T
Q  220 ttcccatcttttggacaaaacgcaagtttgaac 252  Q
     | ||||||| |||||||||| || ||||||||    
T  36643659 cttccatcttgtggacaaaacacaggtttgaac 36643691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 166 - 284
Target Start/End: Original strand, 38863118 - 38863236
Alignment:
Q  166 agtggaaaaacttgaagcatacaacataagagttgaaatacgtttccagagatgttcccatcttttggacaaaacgcaagtttgaacgacctgttttgta 265  Q
    ||||||||| ||||||| || ||| ||||||| || |||||||||| ||||||||| |||||| ||||||||||| |||||| ||| | | ||||| |||    
T  38863118 agtggaaaatcttgaagaatgcaatataagagatggaatacgtttcgagagatgtttccatctcttggacaaaacacaagttcgaatggcatgtttggta 38863217  T
Q  266 tccaatagtgacaaaatgt 284  Q
    | |||   |||||||||||    
T  38863218 ttcaacgatgacaaaatgt 38863236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 50 - 147
Target Start/End: Original strand, 36607408 - 36607505
Alignment:
Q  50 ttttcaaggagttgagactcaatattaccatgacggtcaatatcaagagcttgcagtggaattgaggtatcacgaagagtcaaaatcttagacacgaa 147  Q
    |||| ||||||||||| |||||||| | | |||| ||||  |||||  |  ||||||| ||||||||||||||||||||||||||| || ||||||||    
T  36607408 tttttaaggagttgaggctcaatatcatcgtgacagtcatgatcaatggtgtgcagtgcaattgaggtatcacgaagagtcaaaatatttgacacgaa 36607505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 249
Target Start/End: Complemental strand, 18364304 - 18364242
Alignment:
Q  187 caacataagagttgaaatacgtttccagagatgttcccatcttttggacaaaacgcaagtttg 249  Q
    |||||||||||||| ||| |||||||| ||||||| ||||||| | ||||||| | |||||||    
T  18364304 caacataagagttggaatgcgtttccaaagatgtttccatcttgtagacaaaatggaagtttg 18364242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 249
Target Start/End: Original strand, 36598621 - 36598683
Alignment:
Q  187 caacataagagttgaaatacgtttccagagatgttcccatcttttggacaaaacgcaagtttg 249  Q
    |||||||||||||| ||| |||||||| ||||||| ||||||| | ||||||| | |||||||    
T  36598621 caacataagagttggaatgcgtttccaaagatgtttccatcttgtagacaaaatggaagtttg 36598683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 263
Target Start/End: Complemental strand, 52186892 - 52186852
Alignment:
Q  223 ccatcttttggacaaaacgcaagtttgaacgacctgttttg 263  Q
    ||||||||||||||||| ||| ||||||||| |||||||||    
T  52186892 ccatcttttggacaaaatgcaggtttgaacggcctgttttg 52186852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 32 - 284
Target Start/End: Original strand, 19658172 - 19658424
Alignment:
Q  32 caaacatagtctaaaaccttttcaaggagttgagactcaatattaccatgacggtcaatatcaagagcttgcagtggaattgaggtatcacgaagagtca 131  Q
    |||||||| ||||||| ||||| ||||| | ||| |||||||| |||||||||||||| |||||| || |||| || |||||||||||||||||||||||    
T  19658172 caaacataatctaaaatctttttaaggattcgaggctcaatatgaccatgacggtcaagatcaagggcgtgcaatgaaattgaggtatcacgaagagtca 19658271  T
Q  132 aaatcttagacacgaacatggcaaattgcttcggagtggaaaaacttgaagcatacaacataagagttgaaatacgtttccagagatgttcccatctttt 231  Q
    ||||||||| ||||||  ||| |||||||||| ||||||||||  | |||| || ||| |||||||||| |||| ||||||||||||    ||||||  |    
T  19658272 aaatcttaggcacgaatttggaaaattgcttcagagtggaaaatttggaagaatgcaaaataagagttggaataagtttccagagattcctccatctcgt 19658371  T
Q  232 ggacaaaacgcaagtttgaacgacctgttttgtatccaatagtgacaaaatgt 284  Q
    ||||||||| |||||||||||| | | |||||  ||||| | |||||||||||    
T  19658372 ggacaaaacacaagtttgaacggcatattttgcgtccaaaaatgacaaaatgt 19658424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 32 - 284
Target Start/End: Original strand, 19675011 - 19675263
Alignment:
Q  32 caaacatagtctaaaaccttttcaaggagttgagactcaatattaccatgacggtcaatatcaagagcttgcagtggaattgaggtatcacgaagagtca 131  Q
    |||||||| ||||||| ||||| ||||| | ||| |||||||| |||||||||||||| |||||| || |||| || |||||||||||||||||||||||    
T  19675011 caaacataatctaaaatctttttaaggattcgaggctcaatatgaccatgacggtcaagatcaagggcgtgcaatgaaattgaggtatcacgaagagtca 19675110  T
Q  132 aaatcttagacacgaacatggcaaattgcttcggagtggaaaaacttgaagcatacaacataagagttgaaatacgtttccagagatgttcccatctttt 231  Q
    ||||||||| ||||||  | | |||||||||| ||||||||||  | |||| || ||| |||||||||| |||| ||||||||||||    ||||||  |    
T  19675111 aaatcttaggcacgaatttcgaaaattgcttcagagtggaaaatttggaagaatgcaaaataagagttggaataagtttccagagattcctccatctcgt 19675210  T
Q  232 ggacaaaacgcaagtttgaacgacctgttttgtatccaatagtgacaaaatgt 284  Q
    ||||||||| |||||||||||| | | |||||  ||||| | |||||||||||    
T  19675211 ggacaaaacacaagtttgaacggcatattttgcgtccaaaaatgacaaaatgt 19675263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 20 - 253
Target Start/End: Original strand, 42602701 - 42602934
Alignment:
Q  20 gtattattggaccaaacatagtctaaaaccttttcaaggagttgagactcaatattaccatgacggtcaatatcaagagcttgcagtggaattgaggtat 119  Q
    ||||||| |||  ||||| |||||| |||||||| ||||||||| | ||||||| |||||||||||| || ||||||||| ||||||| | |||||||||    
T  42602701 gtattatgggaataaacacagtctagaacctttttaaggagttgcggctcaatactaccatgacggtgaagatcaagagcatgcagtgcagttgaggtat 42602800  T
Q  120 cacgaagagtcaaaatcttagacacgaacatggcaaattgcttcggagtggaaaaacttgaagcatacaacataagagttgaaatacgtttccagagatg 219  Q
    ||||||||||||||||||||||||| || |||| ||| ||||||  ||||| |||  |||| | || ||| |||||||| | |||||||||||| | | |    
T  42602801 cacgaagagtcaaaatcttagacacaaatatggaaaaatgcttcacagtgggaaagtttgaggaatccaatataagagtaggaatacgtttccacataag 42602900  T
Q  220 ttcccatcttttggacaaaacgcaagtttgaacg 253  Q
     | ||||||||||||||| | |||||||||||||    
T  42602901 cttccatcttttggacaagatgcaagtttgaacg 42602934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 191 - 284
Target Start/End: Complemental strand, 35335946 - 35335853
Alignment:
Q  191 ataagagttgaaatacgtttccagagatgttcccatcttttggacaaaacgcaagtttgaacgacctgttttgtatccaatagtgacaaaatgt 284  Q
    ||||| |||| |||||||||||| ||||||| |||||||||||||||||||||||||||||| || ||||| | ||  |||| |||||||||||    
T  35335946 ataagtgttggaatacgtttccatagatgtttccatcttttggacaaaacgcaagtttgaacaacttgtttggaatgtaataatgacaaaatgt 35335853  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 202 - 253
Target Start/End: Original strand, 33844282 - 33844333
Alignment:
Q  202 aatacgtttccagagatgttcccatcttttggacaaaacgcaagtttgaacg 253  Q
    |||||||||||||||||||| ||||||  ||||||||| |||||||||||||    
T  33844282 aatacgtttccagagatgtttccatctggtggacaaaatgcaagtttgaacg 33844333  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 112 - 147
Target Start/End: Original strand, 33840194 - 33840229
Alignment:
Q  112 tgaggtatcacgaagagtcaaaatcttagacacgaa 147  Q
    |||| |||||||||||||||||||||||||||||||    
T  33840194 tgagttatcacgaagagtcaaaatcttagacacgaa 33840229  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 112 - 147
Target Start/End: Original strand, 33844186 - 33844221
Alignment:
Q  112 tgaggtatcacgaagagtcaaaatcttagacacgaa 147  Q
    |||| |||||||||||||||||||||||||||||||    
T  33844186 tgagttatcacgaagagtcaaaatcttagacacgaa 33844221  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 223 - 263
Target Start/End: Original strand, 43875239 - 43875279
Alignment:
Q  223 ccatcttttggacaaaacgcaagtttgaacgacctgttttg 263  Q
    ||||||||||||||||| ||||||||||||||||| |||||    
T  43875239 ccatcttttggacaaaatgcaagtttgaacgacctcttttg 43875279  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 263
Target Start/End: Original strand, 43864072 - 43864112
Alignment:
Q  223 ccatcttttggacaaaacgcaagtttgaacgacctgttttg 263  Q
    ||||||||||||||||| ||||||||||||| ||| |||||    
T  43864072 ccatcttttggacaaaatgcaagtttgaacggccttttttg 43864112  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 82 - 141
Target Start/End: Complemental strand, 25597108 - 25597049
Alignment:
Q  82 acggtcaatatcaagagcttgcagtggaattgaggtatcacgaagagtcaaaatcttaga 141  Q
    |||||||| ||||||||| ||||||| | ||| | ||||||||||||| |||||||||||    
T  25597108 acggtcaagatcaagagcatgcagtgaagttgtgctatcacgaagagttaaaatcttaga 25597049  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 147
Target Start/End: Complemental strand, 25601962 - 25601848
Alignment:
Q  33 aaacatagtctaaaaccttttcaaggagttgagactcaatattaccatgacggtcaatatcaagagcttgcagtggaattgaggtatcacgaagagtcaa 132  Q
    ||||||| | ||||| |||||  |||||| ||| ||  || ||||||| || ||||| ||||||||| | || || |  |||| ||||||||||||||||    
T  25601962 aaacatactttaaaatctttttgaggagtcgaggctggatgttaccatcacagtcaagatcaagagcattcaatgaagctgagctatcacgaagagtcaa 25601863  T
Q  133 aatcttagacacgaa 147  Q
    ||||||||| |||||    
T  25601862 aatcttagagacgaa 25601848  T

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