View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3562_high_15 (Length: 270)
Name: NF3562_high_15
Description: NF3562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3562_high_15 |
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| [»] chr8 (6 HSPs) |
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| [»] chr4 (11 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] scaffold0508 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 231; Significance: 1e-127; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 16 - 270
Target Start/End: Complemental strand, 12200226 - 12199972
Alignment:
| Q |
16 |
gattccatacgtagatatttgtccaacagtgcaagaatataaaccctctgcatgaacctttaatttcatagaaatcgtaacctctgtgaagcagaaaatt |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |
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| T |
12200226 |
gattccatacgtagatatttgtccaacagtgcaagaatataaaccctctgcatgaacctttaatttcatggaaatagtaacctctgtgaagcagaaaatt |
12200127 |
T |
|
| Q |
116 |
atggtccagtgaaaaggaatcatggttaatggatgtttcaaaatctatagagcgaattccaacaggagatggagttcttgaaattaacacaattcttgcg |
215 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| || ||||||||||||||||||||||||||||||| |
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| T |
12200126 |
atggtccagtgaaaaggaatcatggttaatggatgtttcaaaatctatagaacgaatcccaacagtaggtggagttcttgaaattaacacaattcttgcg |
12200027 |
T |
|
| Q |
216 |
gaggaaacatcaacatgcgaatttgcaaagtgaggatcagagataagagaaaacc |
270 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12200026 |
gaggaaacatcaacatgcgaatttgcaaagtgaggatcagagataagagaaaacc |
12199972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 16 - 270
Target Start/End: Complemental strand, 12444654 - 12444400
Alignment:
| Q |
16 |
gattccatacgtagatatttgtccaacagtgcaagaatataaaccctctgcatgaacctttaatttcatagaaatcgtaacctctgtgaagcagaaaatt |
115 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |
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| T |
12444654 |
gattccatacgtagatatttgtccaacagtgcaagaatataaaccctctgcatgaacctttaatttcatggaaatagtaacctctgtgaagcagaaaatt |
12444555 |
T |
|
| Q |
116 |
atggtccagtgaaaaggaatcatggttaatggatgtttcaaaatctatagagcgaattccaacaggagatggagttcttgaaattaacacaattcttgcg |
215 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| || ||||||||||||||||||||||||||||||| |
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| T |
12444554 |
atggtccagtgaaaaggaatcatggttaatggatgtttcaaaatctatagaacgaatcccaacagtaggtggagttcttgaaattaacacaattcttgcg |
12444455 |
T |
|
| Q |
216 |
gaggaaacatcaacatgcgaatttgcaaagtgaggatcagagataagagaaaacc |
270 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
12444454 |
gaggaaacatcaacatgcgaatttgcaaagtgaggatcagagataagagaaaacc |
12444400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 16 - 270
Target Start/End: Complemental strand, 12195219 - 12194966
Alignment:
| Q |
16 |
gattccatacgtagatatttgtccaacagtgcaagaatataaaccctctgcatgaacctttaatttcatagaaatcgtaacctctgtgaagcagaaaatt |
115 |
Q |
| |
|
||||||||||||||| |||||| |||| | ||| ||||||||||||||||| ||||||||||||||||| ||| |||||| | |||| |||||| | |
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| T |
12195219 |
gattccatacgtagaggtttgtcaaacaattcaataatataaaccctctgcacgaacctttaatttcataaaaaaa-taaccttttggaagtagaaaact |
12195121 |
T |
|
| Q |
116 |
atggtccagtgaaaaggaatcatggttaatggatgtttcaaaatctatagagcgaattccaacaggagatggagttcttgaaattaacacaattcttgcg |
215 |
Q |
| |
|
||||||||| |||| ||||||||||||||||||||||||||||||||| |||||||| || || ||| | |||||||||| || |||||||| |||| |
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| T |
12195120 |
atggtccagcgaaacagaatcatggttaatggatgtttcaaaatctataaagcgaatttcagcaagaggtcgagttcttgatatggacacaatttttgct |
12195021 |
T |
|
| Q |
216 |
gaggaaacatcaacatgcgaatttgcaaagtgaggatcagagataagagaaaacc |
270 |
Q |
| |
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| ||||||||||||||| |||||||||||||| ||||||||||||||||| |||| |
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| T |
12195020 |
gcggaaacatcaacatgtgaatttgcaaagtgtggatcagagataagagataacc |
12194966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 16 - 270
Target Start/End: Complemental strand, 12439647 - 12439394
Alignment:
| Q |
16 |
gattccatacgtagatatttgtccaacagtgcaagaatataaaccctctgcatgaacctttaatttcatagaaatcgtaacctctgtgaagcagaaaatt |
115 |
Q |
| |
|
||||||||||||||| |||||| |||| | ||| ||||||||||||||||| ||||||||||||||||| ||| |||||| | |||| |||||| | |
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| T |
12439647 |
gattccatacgtagaggtttgtcaaacaattcaataatataaaccctctgcacgaacctttaatttcataaaaaaa-taaccttttggaagtagaaaact |
12439549 |
T |
|
| Q |
116 |
atggtccagtgaaaaggaatcatggttaatggatgtttcaaaatctatagagcgaattccaacaggagatggagttcttgaaattaacacaattcttgcg |
215 |
Q |
| |
|
||||||||| |||| ||||||||||||||||||||||||||||||||| |||||||| || || ||| | |||||||||| || |||||||| |||| |
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| T |
12439548 |
atggtccagcgaaacagaatcatggttaatggatgtttcaaaatctataaagcgaatttcagcaagaggtcgagttcttgatatggacacaatttttgct |
12439449 |
T |
|
| Q |
216 |
gaggaaacatcaacatgcgaatttgcaaagtgaggatcagagataagagaaaacc |
270 |
Q |
| |
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| ||||||||||||||| |||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
12439448 |
gcggaaacatcaacatgtgaatttgcaaagtgtggatcagagataagagataacc |
12439394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 230 - 264
Target Start/End: Original strand, 4032289 - 4032323
Alignment:
| Q |
230 |
atgcgaatttgcaaagtgaggatcagagataagag |
264 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| |
|
|
| T |
4032289 |
atgcgaatttgcaaagtgaggatcagatataagag |
4032323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 270
Target Start/End: Complemental strand, 15348563 - 15348527
Alignment:
| Q |
234 |
gaatttgcaaagtgaggatcagagataagagaaaacc |
270 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||||||| |
|
|
| T |
15348563 |
gaatttgcgaagtaaggatcagagataagagaaaacc |
15348527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 11)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 234 - 270
Target Start/End: Complemental strand, 7904733 - 7904697
Alignment:
| Q |
234 |
gaatttgcaaagtgaggatcagagataagagaaaacc |
270 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7904733 |
gaatttgcaaagtgaggatcagagataagagaaaacc |
7904697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 234 - 270
Target Start/End: Original strand, 7238097 - 7238133
Alignment:
| Q |
234 |
gaatttgcaaagtgaggatcagagataagagaaaacc |
270 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
7238097 |
gaatttgcaaagtgagggtcagagataagagaaaacc |
7238133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 234 - 270
Target Start/End: Complemental strand, 7765322 - 7765286
Alignment:
| Q |
234 |
gaatttgcaaagtgaggatcagagataagagaaaacc |
270 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| |
|
|
| T |
7765322 |
gaatttgcaaagtgaggatcagagataatagaaaacc |
7765286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 234 - 270
Target Start/End: Complemental strand, 7771105 - 7771069
Alignment:
| Q |
234 |
gaatttgcaaagtgaggatcagagataagagaaaacc |
270 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||| |
|
|
| T |
7771105 |
gaattttcaaagtgaggatcagagataagagaaaacc |
7771069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 234 - 270
Target Start/End: Complemental strand, 7822670 - 7822634
Alignment:
| Q |
234 |
gaatttgcaaagtgaggatcagagataagagaaaacc |
270 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| |
|
|
| T |
7822670 |
gaatttgcaaagtggggatcagagataagagaaaacc |
7822634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 83
Target Start/End: Original strand, 45372251 - 45372289
Alignment:
| Q |
45 |
tgcaagaatataaaccctctgcatgaacctttaatttca |
83 |
Q |
| |
|
||||| |||||||||||||| |||||||||||||||||| |
|
|
| T |
45372251 |
tgcaaaaatataaaccctctacatgaacctttaatttca |
45372289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 270
Target Start/End: Original strand, 7774206 - 7774242
Alignment:
| Q |
234 |
gaatttgcaaagtgaggatcagagataagagaaaacc |
270 |
Q |
| |
|
||||||||||| || |||||||||||||||||||||| |
|
|
| T |
7774206 |
gaatttgcaaaatggggatcagagataagagaaaacc |
7774242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 270
Target Start/End: Original strand, 45372434 - 45372470
Alignment:
| Q |
234 |
gaatttgcaaagtgaggatcagagataagagaaaacc |
270 |
Q |
| |
|
||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
45372434 |
gaatttgcaaaatgaggatcagagataatagaaaacc |
45372470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 270
Target Start/End: Complemental strand, 48891114 - 48891074
Alignment:
| Q |
230 |
atgcgaatttgcaaagtgaggatcagagataagagaaaacc |
270 |
Q |
| |
|
||||||||||||||| |||||||| |||| ||||||||||| |
|
|
| T |
48891114 |
atgcgaatttgcaaaatgaggatctgagacaagagaaaacc |
48891074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 270
Target Start/End: Original strand, 49041515 - 49041551
Alignment:
| Q |
234 |
gaatttgcaaagtgaggatcagagataagagaaaacc |
270 |
Q |
| |
|
||||||||||| || |||||||||||||||||||||| |
|
|
| T |
49041515 |
gaatttgcaaaatggggatcagagataagagaaaacc |
49041551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 270
Target Start/End: Original strand, 50251181 - 50251221
Alignment:
| Q |
230 |
atgcgaatttgcaaagtgaggatcagagataagagaaaacc |
270 |
Q |
| |
|
|||| |||||||| |||| |||||||||||||||||||||| |
|
|
| T |
50251181 |
atgcaaatttgcacagtggggatcagagataagagaaaacc |
50251221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 234 - 270
Target Start/End: Complemental strand, 24309878 - 24309842
Alignment:
| Q |
234 |
gaatttgcaaagtgaggatcagagataagagaaaacc |
270 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| |
|
|
| T |
24309878 |
gaatttgcaaagtgagaatcagagataagagaaaacc |
24309842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 225 - 264
Target Start/End: Original strand, 11006330 - 11006369
Alignment:
| Q |
225 |
tcaacatgcgaatttgcaaagtgaggatcagagataagag |
264 |
Q |
| |
|
|||| |||||| |||||||||||||||||||||||||||| |
|
|
| T |
11006330 |
tcaaaatgcgattttgcaaagtgaggatcagagataagag |
11006369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 237 - 270
Target Start/End: Original strand, 47452287 - 47452320
Alignment:
| Q |
237 |
tttgcaaagtgaggatcagagataagagaaaacc |
270 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| |
|
|
| T |
47452287 |
tttgcaaagagaggatcagagataagagaaaacc |
47452320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0508 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0508
Description:
Target: scaffold0508; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 270
Target Start/End: Complemental strand, 11963 - 11927
Alignment:
| Q |
234 |
gaatttgcaaagtgaggatcagagataagagaaaacc |
270 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| |
|
|
| T |
11963 |
gaatttgcaaagtgattatcagagataagagaaaacc |
11927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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