View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3562_high_16 (Length: 250)
Name: NF3562_high_16
Description: NF3562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3562_high_16 |
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Alignment Details
Target: chr6 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 12295513 - 12295754
Alignment:
| Q |
1 |
acactgtttactatcgtttaagaatcattgtttactaaaattaggccatttttagaggttttaagacggcttccgacttgaaggttaattttttgaaaag |
100 |
Q |
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| T |
12295513 |
acactgtttactatcgtttaagaatcattgtttactaaaattaggccgtttttagaggttttaagacggcttccgacttgaaggttaattttttgaaaag |
12295612 |
T |
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| Q |
101 |
tttttagttgcagtaaatgttgatcaaaggtttttggaaatagcgtgtgatttcttaaattgtgctcaaagagttatttcgtttaattacttggggttac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
12295613 |
tttttagttgcagtaaatgttgatcaaaggtttttggaaatagcgtgtgatttcttaaattgtgctcaaagagttatttcgtttaattacttggggctac |
12295712 |
T |
|
| Q |
201 |
cggggtaaatccgaggaagatctctacgtgggagcctatgtt |
242 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
12295713 |
cggggtaaatccgaggaagatctctacgtgggagcctatgtt |
12295754 |
T |
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