View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3562_high_20 (Length: 237)
Name: NF3562_high_20
Description: NF3562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3562_high_20 |
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Alignment Details
Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 15 - 152
Target Start/End: Original strand, 8635430 - 8635569
Alignment:
| Q |
15 |
acaataattgttgtctatcatcactaaaattcggattatcaaaatctttcataagaactagagggtt-nnnnnnntgacgtttattaga-tannnnnnnn |
112 |
Q |
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| T |
8635430 |
acaataattgttgtctatcatcactaaaattcggattatcaaaatctttcgtaagaactagagggttaaaaaaaatgacgtttattagattttttttctt |
8635529 |
T |
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| Q |
113 |
nncaagattagattgcaaattctatcacataatcatgtgg |
152 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
8635530 |
ttcaagattagattgcaaattctatcacataatcatgtgg |
8635569 |
T |
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