View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3562_low_18 (Length: 248)
Name: NF3562_low_18
Description: NF3562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3562_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 952206 - 952437
Alignment:
| Q |
1 |
cttaatctaattgatttactttattctttaactatcaactatatctaatgtcccttttggaaaatatcataatcttcattgaaaagctctatagcactcc |
100 |
Q |
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|||||||| || ||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
952206 |
cttaatctcgttcattaactttattccttaactatcaactatatctaatgtcccttttggaaaatatcataatctccattgaaaagctctatagcactcc |
952305 |
T |
|
| Q |
101 |
aatgatgtgagaaatcaagtggtatgaattaatggaagaaagagatgaaatgaaacttacagtattcaagtttttccttgcagtctctctactgagtata |
200 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
952306 |
aatgatgtgagtgatcaagtggtatgaattaatggaagaaagagatgaaatgaaacttacagtattcaagtttttccttgcagtctctctactgagtata |
952405 |
T |
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| Q |
201 |
tcaaaacgatcaagtgcaaggaatgttccaag |
232 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
952406 |
tcaaaacgatcaagtgcaaggaatgttccaag |
952437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 14 - 232
Target Start/End: Complemental strand, 1099718 - 1099501
Alignment:
| Q |
14 |
atttactttattctttaactatcaactatatctaatgtcccttttggaaaatatcataatcttcattgaaaagctctatagcactccaatgatgtgagaa |
113 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
1099718 |
atttactttatt-tttaactatcaactatatctaatgtcccttttggaaaatatcataatctccattgaaaagctctatagcactccaatgatgtgagtg |
1099620 |
T |
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| Q |
114 |
atcaagtggtatgaattaatggaagaaagagatgaaatgaaacttacagtattcaagtttttccttgcagtctctctactgagtatatcaaaacgatcaa |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1099619 |
atcaagtggtatgaattaatggaagaaagagatgaaatgaaacttacagtattcaagtttttccttgcagtctctctactgagtatatcaaaacgatcaa |
1099520 |
T |
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| Q |
214 |
gtgcaaggaatgttccaag |
232 |
Q |
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||||||||||||||||||| |
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| T |
1099519 |
gtgcaaggaatgttccaag |
1099501 |
T |
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