View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3562_low_2 (Length: 449)
Name: NF3562_low_2
Description: NF3562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3562_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 9 - 443
Target Start/End: Original strand, 46486502 - 46486936
Alignment:
| Q |
9 |
tggcacacaactaaggatataaaattaaatttaatttcatcctaatcttattcatatatatacaaatttaaaaacacacaagaatgatgttgttgcaatg |
108 |
Q |
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| T |
46486502 |
tggcacacagctaaggatataaaattaaatttaatttcatcctaatcttattcatatatatacaaatttaaaaacacacaagattgatgttgttgcaatg |
46486601 |
T |
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| Q |
109 |
ctcgaaactcatgaaagaaaaagatacatgaactttgtcacaaaaactcaacataagtgtcatgactttagtagtgcagaattttagggacaatgatgtt |
208 |
Q |
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| T |
46486602 |
ctcgaaactcatgaaagaaaaagatatatgaactttgtcacaaaaactcaacctaagtgtcatgactttagtagtgcagaattatagggacaatgatgtt |
46486701 |
T |
|
| Q |
209 |
tgatgtaggtagtttatttcatggtgacaaaaactatacaataatggtaagtcaagaattatttgaacgtataatgttcaaaattcgagtcttgagcaac |
308 |
Q |
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| T |
46486702 |
tgatgtaggtagtttatttcatggtgacaaaaactatacaataatggtaagtcaagaattatttgaacgtataatgttcaaaattcgagtcttgagcaac |
46486801 |
T |
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| Q |
309 |
acacttgaattagtgtggcttttttctttacaagttcatctttttaattgaggccgaccaacgtaaattctattccatcctccactaatttctctaaatc |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
46486802 |
acacttgaattagtgtggcttttttctttacaagttcatctttttaattgaggccgaccaacgtaaattctattccatcctccactaatttctctatatc |
46486901 |
T |
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| Q |
409 |
acccatgcaatgcacatgtattctagttcttctct |
443 |
Q |
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| T |
46486902 |
acccatgcaatgcacatgtattctagttcttctct |
46486936 |
T |
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