View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3562_low_4 (Length: 430)

Name: NF3562_low_4
Description: NF3562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3562_low_4
NF3562_low_4
[»] chr2 (3 HSPs)
chr2 (18-419)||(7240498-7240899)
chr2 (263-296)||(9556247-9556280)
chr2 (263-296)||(10884550-10884583)
[»] chr6 (2 HSPs)
chr6 (251-295)||(20370880-20370924)
chr6 (255-295)||(20351149-20351189)
[»] chr8 (6 HSPs)
chr8 (244-295)||(1433538-1433589)
chr8 (256-295)||(27028833-27028872)
chr8 (256-297)||(25097388-25097429)
chr8 (263-296)||(26473781-26473814)
chr8 (263-295)||(10075580-10075612)
chr8 (256-296)||(25097394-25097434)
[»] chr7 (3 HSPs)
chr7 (249-291)||(27548258-27548300)
chr7 (258-295)||(529379-529416)
chr7 (255-295)||(48917375-48917415)
[»] chr3 (2 HSPs)
chr3 (247-293)||(25964436-25964482)
chr3 (263-295)||(16790407-16790439)
[»] chr4 (1 HSPs)
chr4 (250-295)||(1706618-1706663)
[»] chr1 (1 HSPs)
chr1 (263-296)||(25479589-25479622)


Alignment Details
Target: chr2 (Bit Score: 382; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 18 - 419
Target Start/End: Complemental strand, 7240899 - 7240498
Alignment:
Q  18 agttgagagtgctcgaaaggcttattgaagcattgaaagtaccgctgattcgtgtcagtgccgctagaattctaagaaatttatgcaactacagtggatc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7240899 agttgagagtgctcgaaaggcttattgaagcattgaaagtaccactgattcgtgtcagtgccgctagaattctaagaaatttatgcaactacagtggatc 7240800  T
Q  118 agaatgcttcaaccagttaaagggagttacagcagcagctccaacagtaagtgttattttcaatttttattaattaaacaattacaagttttatcaacca 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7240799 agaatgcttcaaccagttaaagggagttacagcagcagctccaacagtaagtgttattttcaatttttattaattaaacaattacaagttttatcaacca 7240700  T
Q  218 agttcaagcatgtgagattcgtaaagttatgtaagctttaagctgttttcataagctatctaggatagcttatgaaaactctatgaaaatggcctatgga 317  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||    
T  7240699 agtccaagcatgtgagattcgtaaagttatgtaagctttaagctgttttcataagctatctaggatagcttatgaaaactatctgaaaatggcctatgga 7240600  T
Q  318 cattttagaagctcttcacaatttcataggctctatcaaatggtctttcaagagcttatgtccataaatatgctaaaataagtcgattcaaatagaccct 417  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  7240599 cattttagaagctcttcacaatttcataggctctatcaaatggtctttcaagagcttatgtccatagatatgctaaaataagtcgattcaaatagaccct 7240500  T
Q  418 at 419  Q
    ||    
T  7240499 at 7240498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 296
Target Start/End: Complemental strand, 9556280 - 9556247
Alignment:
Q  263 ttttcataagctatctaggatagcttatgaaaac 296  Q
    |||||||||||| |||||||||||||||||||||    
T  9556280 ttttcataagctttctaggatagcttatgaaaac 9556247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 296
Target Start/End: Original strand, 10884550 - 10884583
Alignment:
Q  263 ttttcataagctatctaggatagcttatgaaaac 296  Q
    |||||||||||| |||||||||||||||||||||    
T  10884550 ttttcataagctctctaggatagcttatgaaaac 10884583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 295
Target Start/End: Original strand, 20370880 - 20370924
Alignment:
Q  251 agctttaagctgttttcataagctatctaggatagcttatgaaaa 295  Q
    |||||||||||||||||||| |||||||||||  |||||||||||    
T  20370880 agctttaagctgttttcatatgctatctaggagtgcttatgaaaa 20370924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 255 - 295
Target Start/End: Original strand, 20351149 - 20351189
Alignment:
Q  255 ttaagctgttttcataagctatctaggatagcttatgaaaa 295  Q
    ||||| |||||||||||||||||| ||||||||||| ||||    
T  20351149 ttaagatgttttcataagctatctcggatagcttataaaaa 20351189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 244 - 295
Target Start/End: Original strand, 1433538 - 1433589
Alignment:
Q  244 ttatgtaagctttaagctgttttcataagctatctaggatagcttatgaaaa 295  Q
    |||| |||||||||||| ||||||||||||||||  ||| ||||||||||||    
T  1433538 ttatttaagctttaagcagttttcataagctatcctggagagcttatgaaaa 1433589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 256 - 295
Target Start/End: Original strand, 27028833 - 27028872
Alignment:
Q  256 taagctgttttcataagctatctaggatagcttatgaaaa 295  Q
    ||||||||||||||||||||||| ||| ||||||||||||    
T  27028833 taagctgttttcataagctatcttggagagcttatgaaaa 27028872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 297
Target Start/End: Original strand, 25097388 - 25097429
Alignment:
Q  256 taagctgttttcataagctatctaggatagcttatgaaaact 297  Q
    ||||||||||||||||||||||  ||| ||||||||||||||    
T  25097388 taagctgttttcataagctatcctggagagcttatgaaaact 25097429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 296
Target Start/End: Original strand, 26473781 - 26473814
Alignment:
Q  263 ttttcataagctatctaggatagcttatgaaaac 296  Q
    |||||||||||| |||||||||||||||||||||    
T  26473781 ttttcataagctctctaggatagcttatgaaaac 26473814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 295
Target Start/End: Original strand, 10075580 - 10075612
Alignment:
Q  263 ttttcataagctatctaggatagcttatgaaaa 295  Q
    |||||||||||| ||||||||||||||||||||    
T  10075580 ttttcataagctctctaggatagcttatgaaaa 10075612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 256 - 296
Target Start/End: Complemental strand, 25097434 - 25097394
Alignment:
Q  256 taagctgttttcataagctatctaggatagcttatgaaaac 296  Q
    ||||| ||||||||||||| || ||||||||||||||||||    
T  25097434 taagcagttttcataagctctccaggatagcttatgaaaac 25097394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 249 - 291
Target Start/End: Original strand, 27548258 - 27548300
Alignment:
Q  249 taagctttaagctgttttcataagctatctaggatagcttatg 291  Q
    |||||| ||||||||||||||||||||||| ||||| ||||||    
T  27548258 taagctataagctgttttcataagctatcttggataacttatg 27548300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 258 - 295
Target Start/End: Original strand, 529379 - 529416
Alignment:
Q  258 agctgttttcataagctatctaggatagcttatgaaaa 295  Q
    ||||||||||||||||||||| ||| ||||||||||||    
T  529379 agctgttttcataagctatcttggagagcttatgaaaa 529416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 255 - 295
Target Start/End: Complemental strand, 48917415 - 48917375
Alignment:
Q  255 ttaagctgttttcataagctatctaggatagcttatgaaaa 295  Q
    ||||| |||||||||||||||||| ||| ||||||||||||    
T  48917415 ttaagttgttttcataagctatcttggagagcttatgaaaa 48917375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 247 - 293
Target Start/End: Original strand, 25964436 - 25964482
Alignment:
Q  247 tgtaagctttaagctgttttcataagctatctaggatagcttatgaa 293  Q
    |||||||| ||||||||||||||||||||||  ||| ||||||||||    
T  25964436 tgtaagctataagctgttttcataagctatcccggaaagcttatgaa 25964482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 295
Target Start/End: Complemental strand, 16790439 - 16790407
Alignment:
Q  263 ttttcataagctatctaggatagcttatgaaaa 295  Q
    |||||||||||||||| ||||||||||||||||    
T  16790439 ttttcataagctatcttggatagcttatgaaaa 16790407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 295
Target Start/End: Original strand, 1706618 - 1706663
Alignment:
Q  250 aagctttaagctgttttcataagctatctaggatagcttatgaaaa 295  Q
    ||||| |||||||||||||||| |||||| ||| ||||||||||||    
T  1706618 aagctataagctgttttcataaactatcttggacagcttatgaaaa 1706663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 296
Target Start/End: Complemental strand, 25479622 - 25479589
Alignment:
Q  263 ttttcataagctatctaggatagcttatgaaaac 296  Q
    |||||||||||| |||||||||||||||||||||    
T  25479622 ttttcataagctctctaggatagcttatgaaaac 25479589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University