View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3562_low_5 (Length: 405)
Name: NF3562_low_5
Description: NF3562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3562_low_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 16 - 391
Target Start/End: Original strand, 14505917 - 14506292
Alignment:
| Q |
16 |
aaaggtacagtgtctagatgaatttttctgattgccataatatcctttaccacgaccatatgatttcttggaatcagaagcactaaccaaaatattggat |
115 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
14505917 |
aaaggtacagtgtctagatgaatttttatgattgccataatatcctttaccacgaccatatgatttcttggaatcagcagcactaaccaaaatattggat |
14506016 |
T |
|
| Q |
116 |
tcatcagtaggaagagaaaggataggtgcatgattactctcttcttgaatcaccaaagaatacaccttgttcaaggatggaaggggatccataagcaaga |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
14506017 |
tcatcagtaggaagagaaaggataggtgcatgattactctcttcttgaatcaccaaataatacaccttgttcaaggatggaaggcgatccataagcaaga |
14506116 |
T |
|
| Q |
216 |
tctgagtcttgacaactgaaaattgatcatttaatccaatgaggaattgcatgatttggtcttcaacacgataaacgtgagaaagagttgaagcttcaca |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
14506117 |
tctgagtcttgacaactgaaaattgatcattcaatccaacgaggaattgcatgatttggtcttcaacacgataaacgtgagcaagagttgaagcttcaca |
14506216 |
T |
|
| Q |
316 |
acagcattgatgagtgcaagaacaagtaggaagaggtctatgtgaattaagttcctcccaaagtgaacgcatttca |
391 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14506217 |
acggcattgatgagtgcaagaacaagtaggaagaggtctatgtgaattaagttcctcccaaagtgaacgcatttca |
14506292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 304; Significance: 1e-171; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 16 - 387
Target Start/End: Original strand, 18482984 - 18483355
Alignment:
| Q |
16 |
aaaggtacagtgtctagatgaatttttctgattgccataatatcctttaccacgaccatatgatttcttggaatcagaagcactaaccaaaatattggat |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| | || ||||||||||||||||| |
|
|
| T |
18482984 |
aaaggtacagtgtctagatgaatttttctgattgctataatatcctttaccacgaccataggatttcttggaatcagcaacattaaccaaaatattggat |
18483083 |
T |
|
| Q |
116 |
tcatcagtaggaagagaaaggataggtgcatgattactctcttcttgaatcaccaaagaatacaccttgttcaaggatggaaggggatccataagcaaga |
215 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
18483084 |
tcatcagcaggaagagaaaggataggtgcatgattactctcttcttgaatcaccaaagaatacaccttgttcaaggatggaagaggatccataagcaaga |
18483183 |
T |
|
| Q |
216 |
tctgagtcttgacaactgaaaattgatcatttaatccaatgaggaattgcatgatttggtcttcaacacgataaacgtgagaaagagttgaagcttcaca |
315 |
Q |
| |
|
||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||||||| |
|
|
| T |
18483184 |
tctgagtcttgacaattgaaaattgatcattcaatccaatgaggaattgcatgatttggtcttcaacacgataaacatgagcacgagttgaagcttcaca |
18483283 |
T |
|
| Q |
316 |
acagcattgatgagtgcaagaacaagtaggaagaggtctatgtgaattaagttcctcccaaagtgaacgcat |
387 |
Q |
| |
|
||||||| ||||| ||||||||||| | |||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
18483284 |
acagcatcgatgaatgcaagaacaatttggaagaggtctatgtgaattaagttcttcccaaagtgaacgcat |
18483355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 26 - 391
Target Start/End: Original strand, 38848663 - 38849028
Alignment:
| Q |
26 |
tgtctagatgaatttttctgattgccataatatcctttaccacgaccatatgatttcttggaatcagaagcactaaccaaaatattggattcatcagtag |
125 |
Q |
| |
|
||||| || ||||| || ||||| |||||||||||||||||||||||||| |||||||| |||| || ||| |||||||||| |||||||| ||||||| |
|
|
| T |
38848663 |
tgtctggaggaattcttttgattaccataatatcctttaccacgaccataagatttcttagaattagtggcattaaccaaaatgttggattcttcagtag |
38848762 |
T |
|
| Q |
126 |
gaagagaaaggataggtgcatgattactctcttcttgaatcaccaaagaatacaccttgttcaaggatggaaggggatccataagcaagatctgagtctt |
225 |
Q |
| |
|
||||||| || || |||| ||||||||||||||| ||||||||||| || ||||| ||||| || || ||||| ||||||||||| |||||||||||||| |
|
|
| T |
38848763 |
gaagagagagaatgggtgtatgattactctcttcctgaatcaccaatgagtacactttgtttaaagaaggaagaggatccataagtaagatctgagtctt |
38848862 |
T |
|
| Q |
226 |
gacaactgaaaattgatcatttaatccaatgaggaattgcatgatttggtcttcaacacgataaacgtgagaaagagttgaagcttcacaacagcattga |
325 |
Q |
| |
|
||||| ||||||||||||||||| |||| || || ||||| || || |||||||| |||||||| |||| |||||||||||||||||| | |||||| |
|
|
| T |
38848863 |
aacaacagaaaattgatcatttaaaccaagaagaaactgcataatctgatcttcaactcgataaacatgagcaagagttgaagcttcacagcgacattga |
38848962 |
T |
|
| Q |
326 |
tgagtgcaagaacaagtaggaagaggtctatgtgaattaagttcctcccaaagtgaacgcatttca |
391 |
Q |
| |
|
||| ||| |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
38848963 |
tgaacgcaggaacaattaggaagaggtctatgtgaattaagttcttcccaaagtgaacgcatttca |
38849028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 152 - 273
Target Start/End: Complemental strand, 14583689 - 14583568
Alignment:
| Q |
152 |
ctctcttcttgaatcaccaaagaatacaccttgttcaaggatggaaggggatccataagcaagatctgagtcttgacaactgaaaattgatcatttaatc |
251 |
Q |
| |
|
||||||||||||| ||||||||||| || ||||| | || ||||| ||||| | ||| | | |||||| | |||||||| ||||||||||| || | |
|
|
| T |
14583689 |
ctctcttcttgaacaaccaaagaataaactttgtttagagaaggaagaggatcaacaagaagaacctgagttctaacaactgagaattgatcattcaagc |
14583590 |
T |
|
| Q |
252 |
caatgaggaattgcatgatttg |
273 |
Q |
| |
|
|| ||||||||||||||||||| |
|
|
| T |
14583589 |
cagtgaggaattgcatgatttg |
14583568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 273
Target Start/End: Complemental strand, 15997588 - 15997467
Alignment:
| Q |
152 |
ctctcttcttgaatcaccaaagaatacaccttgttcaaggatggaaggggatccataagcaagatctgagtcttgacaactgaaaattgatcatttaatc |
251 |
Q |
| |
|
||||||||||||| ||||||||||| || ||||||| || ||||| ||||| | ||| | | |||||| | ||||| || ||||||||||| || |
|
|
| T |
15997588 |
ctctcttcttgaacaaccaaagaataaactttgttcagagaaggaagaggatcaacaagaagaacctgagttctaacaaccgagaattgatcattcaagt |
15997489 |
T |
|
| Q |
252 |
caatgaggaattgcatgatttg |
273 |
Q |
| |
|
||||||| |||||||||||||| |
|
|
| T |
15997488 |
caatgagaaattgcatgatttg |
15997467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 16 - 387
Target Start/End: Complemental strand, 42134783 - 42134412
Alignment:
| Q |
16 |
aaaggtacagtgtctagatgaatttttctgattgccataatatcctttaccacgaccatatgatttcttggaatcagaagcactaaccaaaatattggat |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||| |
|
|
| T |
42134783 |
aaaggtacagtgtctagatgaatttttctgattgctataatatcctttaccacgaccatatgatttcttggaatcagcagcattaaccgaaatattggat |
42134684 |
T |
|
| Q |
116 |
tcatcagtaggaagagaaaggataggtgcatgattactctcttcttgaatcaccaaagaatacaccttgttcaaggatggaaggggatccataagcaaga |
215 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
42134683 |
tcatcagcaggaagagaaaggataggtgcatgattactctcttcttgaattaccaaagaatacaccttgttcaaggatggaagaggatccataagcaaga |
42134584 |
T |
|
| Q |
216 |
tctgagtcttgacaactgaaaattgatcatttaatccaatgaggaattgcatgatttggtcttcaacacgataaacgtgagaaagagttgaagcttcaca |
315 |
Q |
| |
|
||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||||||| |
|
|
| T |
42134583 |
tctgagtcttgacaattgaaaattgatcattcaatccaatgaggaattgcatgatttggtcttcaacacgataaacatgagcacgagttgaagcttcaca |
42134484 |
T |
|
| Q |
316 |
acagcattgatgagtgcaagaacaagtaggaagaggtctatgtgaattaagttcctcccaaagtgaacgcat |
387 |
Q |
| |
|
||||||| ||||| ||||||||||| | |||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
42134483 |
acagcatcgatgaatgcaagaacaatttggaagaggtctatgtgaattaagttcttcccaaagtgaacgcat |
42134412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 16 - 387
Target Start/End: Original strand, 21030958 - 21031329
Alignment:
| Q |
16 |
aaaggtacagtgtctagatgaatttttctgattgccataatatcctttaccacgaccatatgatttcttggaatcagaagcactaaccaaaatattggat |
115 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| |||||||||||||||||||| ||| |||||||||||||||| |||| ||||||||||||||||| |
|
|
| T |
21030958 |
aaaggtacagtgtctagatgaattttttagattgctataatatcctttaccacgacaataggatttcttggaatcagcagcattaaccaaaatattggat |
21031057 |
T |
|
| Q |
116 |
tcatcagtaggaagagaaaggataggtgcatgattactctcttcttgaatcaccaaagaatacaccttgttcaaggatggaaggggatccataagcaaga |
215 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
21031058 |
tcatcagcaggaagagaaaggataggtgcatgattactctcttcttgaatcaccaaagaatacaccttgttcaaggatggaagaggatccataagcaaga |
21031157 |
T |
|
| Q |
216 |
tctgagtcttgacaactgaaaattgatcatttaatccaatgaggaattgcatgatttggtcttcaacacgataaacgtgagaaagagttgaagcttcaca |
315 |
Q |
| |
|
||||||||||||||| | ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| | ||||||||| |||||| |
|
|
| T |
21031158 |
tctgagtcttgacaatttaaaattgatcattcaatccaatgaggaattgcatgatttggtcttcaacacgataaacatgagcacgagttgaagtttcaca |
21031257 |
T |
|
| Q |
316 |
acagcattgatgagtgcaagaacaagtaggaagaggtctatgtgaattaagttcctcccaaagtgaacgcat |
387 |
Q |
| |
|
|| |||||||||| ||||||||||| | |||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
21031258 |
actgcattgatgaatgcaagaacaatttggaagaggtctatgtgaattaagttcttcccaaagtgaacgcat |
21031329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 20 - 391
Target Start/End: Original strand, 28521068 - 28521439
Alignment:
| Q |
20 |
gtacagtgtctagatgaatttttctgattgccataatatcctttaccacgaccatatgatttcttggaatcagaagcactaaccaaaatattggattcat |
119 |
Q |
| |
|
|||||||||| |||||||||||| |||||||||||||||||||||||||| | ||| |||||||||||||||| ||| ||||||||||||||||||||| |
|
|
| T |
28521068 |
gtacagtgtcaagatgaatttttttgattgccataatatcctttaccacgcctataggatttcttggaatcagcggcattaaccaaaatattggattcat |
28521167 |
T |
|
| Q |
120 |
cagtaggaagagaaaggataggtgcatgattactctcttcttgaatcaccaaagaatacaccttgttcaaggatggaaggggatccataagcaagatctg |
219 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
28521168 |
cagtaggaagagaaaggataggtgtatgattactctcttcttgaatcaccaaagaatacaccttgttcaaggatggaagaggatccataagcaagatctg |
28521267 |
T |
|
| Q |
220 |
agtcttgacaactgaaaattgatcatttaatccaatgaggaattgcatgatttggtcttcaacacgataaacgtgagaaagagttgaagcttcacaacag |
319 |
Q |
| |
|
||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |
|
|
| T |
28521268 |
agtcttgacaattgaaaattgatcattcaatccaatgaggaattgcatgatttggtcttcaacacgataaacgtgagcaagagttgaagcttagcaacga |
28521367 |
T |
|
| Q |
320 |
cattgatgagtgcaagaacaagtaggaagaggtctatgtgaattaagttcctcccaaagtgaacgcatttca |
391 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||||||||| |||||||||| ||||||||||| ||||||||| |
|
|
| T |
28521368 |
cattgatgaatgcaagaacaattaggaagaggtctatgtaaattaagttcttcccaaagtgagcgcatttca |
28521439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 144; Significance: 1e-75; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 32 - 391
Target Start/End: Original strand, 17481986 - 17482345
Alignment:
| Q |
32 |
gatgaatttttctgattgccataatatcctttaccacgaccatatgatttcttggaatcagaagcactaaccaaaatattggattcatcagtaggaagag |
131 |
Q |
| |
|
|||||||| |||||||| |||||||||||| ||||| ||||||| || ||||| ||||||| ||| || ||||||| ||||| |||||||||| ||||| |
|
|
| T |
17481986 |
gatgaattcttctgatttccataatatcctataccaagaccataagacttctttgaatcagtggcattagccaaaatgttggactcatcagtagcaagag |
17482085 |
T |
|
| Q |
132 |
aaaggataggtgcatgattactctcttcttgaatcaccaaagaatacaccttgttcaaggatggaaggggatccataagcaagatctgagtcttgacaac |
231 |
Q |
| |
|
| || |||||||||||||||||||| ||||||||||| || ||||||| || ||||| || ||||| |||||||||||||| || ||||||||||| || |
|
|
| T |
17482086 |
agagtataggtgcatgattactctcctcttgaatcactaaggaatacattttattcaaagaaggaagaggatccataagcaaaatttgagtcttgaccac |
17482185 |
T |
|
| Q |
232 |
tgaaaattgatcatttaatccaatgaggaattgcatgatttggtcttcaacacgataaacgtgagaaagagttgaagcttcacaacagcattgatgagtg |
331 |
Q |
| |
|
||||||||| || || | || ||||| |||||||||||||| ||||||||| |||| || |||| |||||||||||||||||||| ||||||||| | |
|
|
| T |
17482186 |
tgaaaattggtctttcaggcctatgagaaattgcatgatttgatcttcaacatgatacacatgagcaagagttgaagcttcacaacgacattgatgaata |
17482285 |
T |
|
| Q |
332 |
caagaacaagtaggaagaggtctatgtgaattaagttcctcccaaagtgaacgcatttca |
391 |
Q |
| |
|
|| |||||| |||||||||| || |||||||| | ||| |||||||| || | ||||||| |
|
|
| T |
17482286 |
catgaacaattaggaagaggcctgtgtgaatttaattcttcccaaagagagcacatttca |
17482345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 149 - 281
Target Start/End: Original strand, 44668971 - 44669103
Alignment:
| Q |
149 |
ttactctcttcttgaatcaccaaagaatacaccttgttcaaggatggaaggggatccataagcaagatctgagtcttgacaactgaaaattgatcattta |
248 |
Q |
| |
|
||||||||||||||||| |||||||| | |||||||||||||| ||||| |||||||| | | | |||||||| | ||||||||||| ||||| | |
|
|
| T |
44668971 |
ttactctcttcttgaataaccaaagagaaaaccttgttcaaggaaggaagtggatccattaagagaacttgagtcttaagcactgaaaattgctcattaa |
44669070 |
T |
|
| Q |
249 |
atccaatgaggaattgcatgatttggtcttcaa |
281 |
Q |
| |
|
||| | || ||||| |||||||||||||||| |
|
|
| T |
44669071 |
gaccagtaagaaattgaatgatttggtcttcaa |
44669103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 143 - 280
Target Start/End: Original strand, 23168856 - 23168993
Alignment:
| Q |
143 |
gcatgattactctcttcttgaatcaccaaagaatacaccttgttcaaggatggaaggggatccataagcaagatctgagtcttgacaactgaaaattgat |
242 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| || ||||||||||| ||||| ||||| | ||| | | ||||| || || |||||||||| |
|
|
| T |
23168856 |
gcatgattactctcttcttgaaccaccaaagaataaactttgttcaaggaaggaagaggatcaagaagaagtacttgagtacgaaccacagaaaattgat |
23168955 |
T |
|
| Q |
243 |
catttaatccaatgaggaattgcatgatttggtcttca |
280 |
Q |
| |
|
||||||| | | | || ||||||||||||||||||||| |
|
|
| T |
23168956 |
catttaaactagttagaaattgcatgatttggtcttca |
23168993 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 174 - 246
Target Start/End: Original strand, 18835376 - 18835448
Alignment:
| Q |
174 |
aatacaccttgttcaaggatggaaggggatccataagcaagatctgagtcttgacaactgaaaattgatcatt |
246 |
Q |
| |
|
|||||||||||||||| || ||||| |||||||||||||| || |||||||| |||||||||||||| ||||| |
|
|
| T |
18835376 |
aatacaccttgttcaaagaaggaagaggatccataagcaaaatttgagtcttaacaactgaaaattgctcatt |
18835448 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 200 - 264
Target Start/End: Original strand, 19805820 - 19805884
Alignment:
| Q |
200 |
ggatccataagcaagatctgagtcttgacaactgaaaattgatcatttaatccaatgaggaattg |
264 |
Q |
| |
|
|||||||||||||||| ||||||||| |||||||| || | |||||| |||| | |||| ||||| |
|
|
| T |
19805820 |
ggatccataagcaagacctgagtcttaacaactgagaaattatcattcaatctagtgagaaattg |
19805884 |
T |
|
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