View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3562_low_6 (Length: 351)
Name: NF3562_low_6
Description: NF3562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3562_low_6 |
 | |
|
| [»] scaffold0259 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 293; Significance: 1e-164; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 20 - 340
Target Start/End: Complemental strand, 32631660 - 32631340
Alignment:
| Q |
20 |
cagttgactgtgtaagatcacatgttgcttcaaacaggatgaagctgaagtttgagttgggttctgcattttaccattggggatttaataaaatgggcga |
119 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
32631660 |
cagttgactgtgtaagatttcattttgcttcaaacaggatgaagctgaagtttgattttggttctgcattttaccattggggatttgataaaatgggcga |
32631561 |
T |
|
| Q |
120 |
ggaagtttcacttcaatggacaggtgatgaagaaaagagatttaaggatataatgagtctaaaaatcccctcccaaaacaagtccttttggaacaatcca |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
32631560 |
ggaagtttcacttcaatggacaggtgatgaagaaaagagatttaaggatataatgagtctaaaaatcccctcccaaaacaagtctttttggaacaatcca |
32631461 |
T |
|
| Q |
220 |
tccagttactttcaaaagaggacaagaaaagacatggtgagttattacttcaatgtatatcttattcaactaagaagttatcagaatcgagtgacttcgg |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32631460 |
tccagttactttcaaaagaggacaagaaaagacatggtgagttattacttcaatgtatatcttattcaactaagaagttatcagaatcgagtgacttcgg |
32631361 |
T |
|
| Q |
320 |
agactgttgacagtgatgatg |
340 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
32631360 |
agactgttgacagtgatgatg |
32631340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 20 - 340
Target Start/End: Complemental strand, 32657552 - 32657232
Alignment:
| Q |
20 |
cagttgactgtgtaagatcacatgttgcttcaaacaggatgaagctgaagtttgagttgggttctgcattttaccattggggatttaataaaatgggcga |
119 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| |||||||||| || |
|
|
| T |
32657552 |
cagttgactgtgtaagatttcattttgcttcaaacaggatgaagctgaagtttgattttggttctgcattttaccattggggatttgataaaatgggtga |
32657453 |
T |
|
| Q |
120 |
ggaagtttcacttcaatggacaggtgatgaagaaaagagatttaaggatataatgagtctaaaaatcccctcccaaaacaagtccttttggaacaatcca |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
32657452 |
ggaagtttcacttcaatggacaggtgatgaagaaaagagatttaaggatataatgagtctaaaaatcccctcccaaaacaagtctttttggaacaatcca |
32657353 |
T |
|
| Q |
220 |
tccagttactttcaaaagaggacaagaaaagacatggtgagttattacttcaatgtatatcttattcaactaagaagttatcagaatcgagtgacttcgg |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32657352 |
tccagttactttcaaaagaggacaagaaaagacatggtgagttattacttcaatgtatatcttattcaactaagaagttatcagaatcgagtgacttcgg |
32657253 |
T |
|
| Q |
320 |
agactgttgacagtgatgatg |
340 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
32657252 |
agactgttgacagtgatgatg |
32657232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 20 - 340
Target Start/End: Complemental strand, 32582414 - 32582094
Alignment:
| Q |
20 |
cagttgactgtgtaagatcacatgttgcttcaaacaggatgaagctgaagtttgagttgggttctgcattttaccattggggatttaataaaatgggcga |
119 |
Q |
| |
|
|||||||||||||||||| ||| ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| || |
|
|
| T |
32582414 |
cagttgactgtgtaagattgcatattgctgcaaacaggatgaagctgaagtttgaattgggttctgcattttaccattggggatttgataaaatgggtga |
32582315 |
T |
|
| Q |
120 |
ggaagtttcacttcaatggacaggtgatgaagaaaagagatttaaggatataatgagtctaaaaatcccctcccaaaacaagtccttttggaacaatcca |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
32582314 |
ggaagtttcacttcaatggacaggtgatgaggaaaagagatttaaggatataatgagtctaaaaatcccctcccaaaacaagtctttttggaacaatccg |
32582215 |
T |
|
| Q |
220 |
tccagttactttcaaaagaggacaagaaaagacatggtgagttattacttcaatgtatatcttattcaactaagaagttatcagaatcgagtgacttcgg |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
32582214 |
tccagttactttcaaaagaggacaagaaaagacatggtgagatattacttcaatgtatatcttattcaactaagaagctatcagaatcgagtgacttcgg |
32582115 |
T |
|
| Q |
320 |
agactgttgacagtgatgatg |
340 |
Q |
| |
|
|||||||| |||||||||||| |
|
|
| T |
32582114 |
agactgtttacagtgatgatg |
32582094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 126 - 340
Target Start/End: Complemental strand, 32600441 - 32600227
Alignment:
| Q |
126 |
ttcacttcaatggacaggtgatgaagaaaagagatttaaggatataatgagtctaaaaatcccctcccaaaacaagtccttttggaacaatccatccagt |
225 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |
|
|
| T |
32600441 |
ttcacttcaatggacaggtgatgaagaaaagagatttaaggatataatgagtctaaaaatcccctcccaaaacaattctttttggaacaatccatccagt |
32600342 |
T |
|
| Q |
226 |
tactttcaaaagaggacaagaaaagacatggtgagttattacttcaatgtatatcttattcaactaagaagttatcagaatcgagtgacttcggagactg |
325 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32600341 |
tactttcaaaagaggacaagaaaagacatggtgagttattacttcaatgtatatcttattcaactaagaagttatcagaatcgagtgacttcggagactg |
32600242 |
T |
|
| Q |
326 |
ttgacagtgatgatg |
340 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
32600241 |
ttgacagtgatgatg |
32600227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0259 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: scaffold0259
Description:
Target: scaffold0259; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 54 - 340
Target Start/End: Complemental strand, 21716 - 21430
Alignment:
| Q |
54 |
caggatgaagctgaagtttgagttgggttctgcattttaccattggggatttaataaaatgggcgaggaagtttcacttcaatggacaggtgatgaagaa |
153 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||||||||||||||| |||||| |||||||||| ||||||||||||| |||||||||||||||| ||||| |
|
|
| T |
21716 |
caggatgaagctgaagtttgaattgggttttgcattttaccattgaggatttgataaaatgggtgaggaagtttcacatcaatggacaggtgattaagaa |
21617 |
T |
|
| Q |
154 |
aagagatttaaggatataatgagtctaaaaatcccctcccaaaacaagtccttttggaacaatccatccagttactttcaaaagaggacaagaaaagaca |
253 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||| || || ||||| ||||||||||| |||||||||||||||||| |||||||||||| |
|
|
| T |
21616 |
aagagatttaaggttataatgagtctaaaaatcccctcccaaaataattctttttgcaacaatccatcaagttactttcaaaagagggcaagaaaagaca |
21517 |
T |
|
| Q |
254 |
tggtgagttattacttcaatgtatatcttattcaactaagaagttatcagaatcgagtgacttcggagactgttgacagtgatgatg |
340 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| ||| ||||| |||||||||| |
|
|
| T |
21516 |
tgctgagttattacttcaatgtatatcttattcaactaagaagctatcagaatcaagtgacttcaaggaccgttgatagtgatgatg |
21430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 175; Significance: 4e-94; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 22 - 332
Target Start/End: Complemental strand, 41172299 - 41171989
Alignment:
| Q |
22 |
gttgactgtgtaagatcacatgttgcttcaaacaggatgaagctgaagtttgagttgggttctgcattttaccattggggatttaataaaatgggcgagg |
121 |
Q |
| |
|
||||||||||| |||| ||| ||||| |||||||||||||||||| |||| ||| ||| | ||||| |||||||||||| |||||||||| |||| |
|
|
| T |
41172299 |
gttgactgtgtcagattccatattgctgagaacaggatgaagctgaagcttgaattgcattccgtgttttatcattggggatttgataaaatgggtgagg |
41172200 |
T |
|
| Q |
122 |
aagtttcacttcaatggacaggtgatgaagaaaagagatttaaggatataatgagtctaaaaatcccctcccaaaacaagtccttttggaacaatccatc |
221 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||||||||||||||||| |||||| ||||| ||||||||||||||||||| |||||||||||||| || |
|
|
| T |
41172199 |
aagtttcacttcgatggacagctgatgaagaaaagagatttaaggatgcaatgaggttaaaattcccctcccaaaacaagtctttttggaacaatccttc |
41172100 |
T |
|
| Q |
222 |
cagttactttcaaaagaggacaagaaaagacatggtgagttattacttcaatgtatatcttattcaactaagaagttatcagaatcgagtgacttcggag |
321 |
Q |
| |
|
||| ||||||| ||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |
|
|
| T |
41172099 |
cagatactttcgaaacaagacaagaaaagacatggtgagctattacttcaatgtatatcttattcaactaagaagttatcagaatcgagtgaccccgaag |
41172000 |
T |
|
| Q |
322 |
actgttgacag |
332 |
Q |
| |
|
||||||||||| |
|
|
| T |
41171999 |
actgttgacag |
41171989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 22 - 330
Target Start/End: Complemental strand, 41164182 - 41163874
Alignment:
| Q |
22 |
gttgactgtgtaagatcacatgttgcttcaaacaggatgaagctgaagtttgagttgggttctgcattttaccattggggatttaataaaatgggcgagg |
121 |
Q |
| |
|
||||||||||| ||| ||| ||||| ||||||||| || |||||| |||| |||||||||||||||||||||||||||||| ||||||||||||| | |
|
|
| T |
41164182 |
gttgactgtgtcagacttcatattgctgcaaacaggaccaaactgaagcttgaattgggttctgcattttaccattggggatttgataaaatgggcgaag |
41164083 |
T |
|
| Q |
122 |
aagtttcacttcaatggacaggtgatgaagaaaagagatttaaggatataatgagtctaaaaatcccctcccaaaacaagtccttttggaacaatccatc |
221 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||||||||||||||||| ||||| |||||||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
41164082 |
aagtttcacttcgatggacagctgatgaagaaaagagatttaaggatgcgatgaggttaaaaatcccttcccaaaacaagtctttttggaacaatccatc |
41163983 |
T |
|
| Q |
222 |
cagttactttcaaaagaggacaagaaaagacatggtgagttattacttcaatgtatatcttattcaactaagaagttatcagaatcgagtgacttcggag |
321 |
Q |
| |
|
|| ||||||| || || ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |||| ||||||||||| | || || |
|
|
| T |
41163982 |
catatactttcgaaggaagacaagaaaagacatggtgagctattgcttcaatgtatatcttattcaactaagaagctatcggaatcgagtgaatccgaag |
41163883 |
T |
|
| Q |
322 |
actgttgac |
330 |
Q |
| |
|
||||||||| |
|
|
| T |
41163882 |
actgttgac |
41163874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 22 - 340
Target Start/End: Complemental strand, 41147418 - 41147100
Alignment:
| Q |
22 |
gttgactgtgtaagatcacatgttgcttcaaacaggatgaagctgaagtttgagttgggttctgcattttaccattggggatttaataaaatgggcgagg |
121 |
Q |
| |
|
||||||||||| |||| ||| ||||| |||||||||||||||||| |||| ||| ||| || ||||| |||||||||||| ||||||||||||||| |
|
|
| T |
41147418 |
gttgactgtgtcagattccatattgctgataacaggatgaagctgaagcttgaattgcgttgtgtgttttatcattggggatttgataaaatgggcgagg |
41147319 |
T |
|
| Q |
122 |
aagtttcacttcaatggacaggtgatgaagaaaagagatttaaggatataatgagtctaaaaatcccctcccaaaacaagtccttttggaacaatccatc |
221 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||||||||||||||||| ||| || ||||||||||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
41147318 |
aagtttcacttcgatggacagctgatgaagaaaagagatttaaggatgcaataggtttaaaaatcccctctcaaaacaagtctttttggaacaatccatc |
41147219 |
T |
|
| Q |
222 |
cagttactttcaaaagaggacaagaaaagacatggtgagttattacttcaatgtatatcttattcaactaagaagttatcagaatcgagtgacttcggag |
321 |
Q |
| |
|
||| | ||||| || || ||||||||||||| ||||||| |||||||||||||||||| |||||||||||||||| |||||||||||||||||| || | |
|
|
| T |
41147218 |
cagatgctttcgaaggaagacaagaaaagacttggtgagctattacttcaatgtatattttattcaactaagaagctatcagaatcgagtgactccgaat |
41147119 |
T |
|
| Q |
322 |
actgttgacagtgatgatg |
340 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
41147118 |
gctgttgacagtgatgatg |
41147100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 113; Significance: 4e-57; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 53 - 340
Target Start/End: Complemental strand, 26405000 - 26404715
Alignment:
| Q |
53 |
acaggatgaagctgaagtttgagttgggttctgcattttaccattggggatttaataaaatgggcgaggaagtttcacttcaatggacaggtgatgaaga |
152 |
Q |
| |
|
|||| |||||| ||||| |||| ||| ||| || ||||| ||||| |||||| ||||||||||||| ||||||||||||||||||||| ||||||||| |
|
|
| T |
26405000 |
acagaatgaagttgaagcttgaattgcgttatgtgttttatcattgaggatttgataaaatgggcgaagaagtttcacttcaatggacatctgatgaaga |
26404901 |
T |
|
| Q |
153 |
aaagagatttaaggatataatgagtctaaaaatcccctcccaaaacaagtccttttggaacaatccatccagttactttcaaaagaggacaagaaaagac |
252 |
Q |
| |
|
|||||||||||||||| ||||| ||||||| ||||| |||| |||||| | |||||| |||||||| || | |||||||| || ||||||||||| |
|
|
| T |
26404900 |
aaagagatttaaggatgcaatgaagttaaaaattccctctcaaagcaagtcatattggaaaaatccatctagatgctttcaaaggaatgcaagaaaagac |
26404801 |
T |
|
| Q |
253 |
atggtgagttattacttcaatgtatatcttattcaactaagaagttatcagaatcgagtgacttcggagactgttgacagtgatgatg |
340 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||| ||||| |||||||||||| || | |||||||||| ||| |||| |
|
|
| T |
26404800 |
--ggtgagctattacttcaatgtatatcttattcaactaagaatctatcaaaatcgagtgactccgaacactgttgacaatgacgatg |
26404715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 24 - 126
Target Start/End: Complemental strand, 26398419 - 26398317
Alignment:
| Q |
24 |
tgactgtgtaagatcacatgttgcttcaaacaggatgaagctgaagtttgagttgggttctgcattttaccattggggatttaataaaatgggcgaggaa |
123 |
Q |
| |
|
|||||||||||||| ||| ||| | ||||||||| | | |||||| |||| ||||||||||||||||||||| ||||||| | ||||||||||||||| |
|
|
| T |
26398419 |
tgactgtgtaagatttcatattggtgcaaacaggacggaactgaagcttgaattgggttctgcattttaccatatgggatttgacaaaatgggcgaggaa |
26398320 |
T |
|
| Q |
124 |
gtt |
126 |
Q |
| |
|
||| |
|
|
| T |
26398319 |
gtt |
26398317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 24 - 126
Target Start/End: Original strand, 21015995 - 21016097
Alignment:
| Q |
24 |
tgactgtgtaagatcacatgttgcttcaaacaggatgaagctgaagtttgagttgggttctgcattttaccattggggatttaataaaatgggcgaggaa |
123 |
Q |
| |
|
|||||||||||||| ||| ||| | ||||||||| | | |||||| |||| ||| |||||||||||||||||||||||||| | ||||||||||||||| |
|
|
| T |
21015995 |
tgactgtgtaagatttcatattggtgcaaacaggacggaactgaagcttgaattgagttctgcattttaccattggggatttgacaaaatgggcgaggaa |
21016094 |
T |
|
| Q |
124 |
gtt |
126 |
Q |
| |
|
||| |
|
|
| T |
21016095 |
gtt |
21016097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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