View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3563_high_2 (Length: 336)
Name: NF3563_high_2
Description: NF3563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3563_high_2 |
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| [»] chr4 (2 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 9 - 336
Target Start/End: Complemental strand, 56185417 - 56185090
Alignment:
| Q |
9 |
agcacagaatgcagatacaaagttatgagcactaatgttgattgaaattccataacaaaacttagcacagagttcaaaagcatcttcccctccaggtata |
108 |
Q |
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| T |
56185417 |
agcacagaatgcagatacaaagttatgagcactaatgttgattgaaattccataacaaaacttagcacagagttcaaaagcatcttcccctccaggtata |
56185318 |
T |
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| Q |
109 |
tcatgaagctccacagtaaaactctctgaatcactagaatcatagcaaagcctttgtaggagtccacattttggaagaagggcaaactgcagataaaaag |
208 |
Q |
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| T |
56185317 |
tcatgaagctccacagtaaaactctctgaatcactagaatcatagcaaagcctttgtaggagtccacattttggaagaagggcaaactgcagataaaaag |
56185218 |
T |
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| Q |
209 |
aacataattatatagatgaactaaaataaaaatattttggtttataaccacttgagttctaagtccttaataccttgtgtagcagataagtaacatcatt |
308 |
Q |
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| T |
56185217 |
aacataattatatagatgaactaaaataaaaatattttggtttgtaaccacttgagttctaagtccttaataccttgtgtagcagataagttacatcatt |
56185118 |
T |
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| Q |
309 |
gatttgtattacaaggtctgagggtatc |
336 |
Q |
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| T |
56185117 |
gatttgtattacaaggtctgagggtatc |
56185090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 118 - 336
Target Start/End: Complemental strand, 31192036 - 31191818
Alignment:
| Q |
118 |
tccacagtaaaactctctgaatcactagaatcatagcaaagcctttgtaggagtccacattttggaagaagggcaaactgcagataaaaagaacataatt |
217 |
Q |
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| T |
31192036 |
tccacaataaaaatctttgaatcactacaatcatagcaaagcctttggaggagtctacattttggaagaagggcaaactgcagataaaaagaaaataatt |
31191937 |
T |
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| Q |
218 |
atatagatgaactaaaataaaaatattttggtttataaccacttgagttctaagtccttaataccttgtgtagcagataagtaacatcattgatttgtat |
317 |
Q |
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| T |
31191936 |
gtatagatgaactaaaatcaaaatattttggtttatatccacttgagttctaagtccttaataccttgtgtagcagataagtaacatcgttgatctgtat |
31191837 |
T |
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| Q |
318 |
tacaaggtctgagggtatc |
336 |
Q |
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||||||| |||||||||| |
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| T |
31191836 |
aacaaggtatgagggtatc |
31191818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 171; Significance: 8e-92; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 118 - 336
Target Start/End: Original strand, 16807835 - 16808053
Alignment:
| Q |
118 |
tccacagtaaaactctctgaatcactagaatcatagcaaagcctttgtaggagtccacattttggaagaagggcaaactgcagataaaaagaacataatt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||| ||||||||||||| |||||| |
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| T |
16807835 |
tccacagtaaaactctctgaatcactagaatcatagcaaagcctctgttggagtctacattttggaagaagggcaaactacagataaaaagaaaataatt |
16807934 |
T |
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| Q |
218 |
atatagatgaactaaaataaaaatattttggtttataaccacttgagttctaagtccttaataccttgtgtagcagataagtaacatcattgatttgtat |
317 |
Q |
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||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||| |
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| T |
16807935 |
gtatagatgaactaaaatcaaaatattttggtttatatccacttgagttctaagtccttaataccttgtgtagcagataagtaacaccgttgatctgtat |
16808034 |
T |
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| Q |
318 |
tacaaggtctgagggtatc |
336 |
Q |
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|||||| |||||||||||| |
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| T |
16808035 |
tacaagatctgagggtatc |
16808053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 31 - 181
Target Start/End: Complemental strand, 10015538 - 10015388
Alignment:
| Q |
31 |
ttatgagcactaatgttgattgaaattccataacaaaacttagcacagagttcaaaagcatcttcccctccaggtatatcatgaagctccacagtaaaac |
130 |
Q |
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||||||||||||||||||||||||| |||||| |||||||| ||||| ||||||||||| ||| || ||||| ||||||| |||||| | || || || |
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| T |
10015538 |
ttatgagcactaatgttgattgaaactccatagcaaaactttgcacaaagttcaaaagcctctgatccaccaggcatatcattaagctctagaggaacac |
10015439 |
T |
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| Q |
131 |
tctctgaatcactagaatcatagcaaagcctttgtaggagtccacattttg |
181 |
Q |
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||| |||||| ||| |||| | ||||| |||||||| || || ||||||| |
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| T |
10015438 |
tcttagaatcattagtatcagaacaaagtctttgtagaaggccgcattttg |
10015388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 82
Target Start/End: Complemental strand, 10021325 - 10021252
Alignment:
| Q |
9 |
agcacagaatgcagatacaaagttatgagcactaatgttgattgaaattccataacaaaacttagcacagagtt |
82 |
Q |
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|||||| |||| || |||||| |||| |||||||||||||||||||| |||||| || ||||||||||| |||| |
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| T |
10021325 |
agcacaaaatgaaggtacaaaattataagcactaatgttgattgaaactccatagcagaacttagcacaaagtt |
10021252 |
T |
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