View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3563_low_1 (Length: 203)

Name: NF3563_low_1

Description: NF3563

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF3563_low_1

[»] chr2 (5 HSPs)

Alignment Details

Target: chr2 (Bit Score: 182; Significance: 1e-98; HSPs: 5)

Name: chr2

Description:

Target: chr2; HSP #1

Raw Score: 182; E-Value: 1e-98

Query Start/End: Original strand, 18 - 203

Target Start/End: Complemental strand, 31202530 - 31202345

Alignment:

Q	18	tccatatatctctttccaggaacgtatctcttgctacaattaattgcttaatataacccttacacattcatgcattgatttcatttattccattcacttg	117	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	31202530	tccatatatctctttccaggaacgtatctcttgctacaattaattgcttaatataacccttacacattcatgcattgatttcatttattccattcacttg	31202431	T

Q	118	tttcaaatatgaagcttatcatgaacacgtttttgcatcttttgtttctttccttttgtttgatctcttcatttgctagtggagct	203	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	31202430	tttcaaatatgaagcttatcatgaacacgtctttgcatcttttgtttctttccttttgtttgatctcttcatttgctagtggagct	31202345	T

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Target: chr2; HSP #2

Raw Score: 170; E-Value: 2e-91

Query Start/End: Original strand, 18 - 203

Target Start/End: Complemental strand, 31222083 - 31221898

Alignment:

Q	18	tccatatatctctttccaggaacgtatctcttgctacaattaattgcttaatataacccttacacattcatgcattgatttcatttattccattcacttg	117	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	31222083	tccatatatctctttccaggaacgcatctcttgctacaattaattgcttaatataacccttacacattcatggattgatttcatttattccattcacttg	31221984	T

Q	118	tttcaaatatgaagcttatcatgaacacgtttttgcatcttttgtttctttccttttgtttgatctcttcatttgctagtggagct	203	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|
T	31221983	tttcaaatatgaagcttatcatgaacacgtctttgcatcttttgtttctttccttttgtttgatctcttcatttgctagaggagct	31221898	T

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Target: chr2; HSP #3

Raw Score: 127; E-Value: 9e-66

Query Start/End: Original strand, 18 - 203

Target Start/End: Complemental strand, 31183504 - 31183319

Alignment:

Q	18	tccatatatctctttccaggaacgtatctcttgctacaattaattgcttaatataacccttacacattcatgcattgatttcattta-ttccattcactt	116	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\|
T	31183504	tccatatatctctttccgggaacgtatctcatgctacaat-aattgcttaatataacccttacactttcaaccactgatttcattttctttcattcactt	31183406	T

Q	117	gtttcaaatatgaagcttatcatgaacacgtttttgcatcttttgtttctttccttttgtttgatctcttcatttgctagtggagct	203	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	31183405	gtttcaaatatgaagcctatcatgaacaagtctttgcatcttttgtttctttccttttgtttgatctcttcatttgctagtggagct	31183319	T

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Target: chr2; HSP #4

Raw Score: 39; E-Value: 0.0000000000003

Query Start/End: Original strand, 153 - 203

Target Start/End: Complemental strand, 31248901 - 31248851

Alignment:

Q	153	catcttttgtttctttccttttgtttgatctcttcatttgctagtggagct	203	Q
		\|\|\|\|\|\|\|\|\| \|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	31248901	catcttttgcttcttgctttttgtttgatctcttcatttgctagtggagct	31248851	T

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Target: chr2; HSP #5

Raw Score: 36; E-Value: 0.00000000002

Query Start/End: Original strand, 157 - 200

Target Start/End: Complemental strand, 31238343 - 31238300

Alignment:

Q	157	ttttgtttctttccttttgtttgatctcttcatttgctagtgga	200	Q
		\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	31238343	ttttgcttctttccttttgttttatctcttcatttgctagtgga	31238300	T

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