View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3564_high_11 (Length: 381)
Name: NF3564_high_11
Description: NF3564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3564_high_11 |
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Alignment Details
Target: chr6 (Bit Score: 160; Significance: 4e-85; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 19 - 320
Target Start/End: Complemental strand, 11379155 - 11378849
Alignment:
| Q |
19 |
gtttatttatgtttatt-acttttaggacttagccattgatgtttaatggttta-------ttatttcttagatctcgaagccattactttcatttcttg |
110 |
Q |
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| T |
11379155 |
gtttatttatgtttatttacttttaggacttagccattaatgtttaatggtttagttatgtttattacatagatctctaagccattactttgatttcttg |
11379056 |
T |
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| Q |
111 |
aaatcaatatatcccaagatctgtatcaccattaatccattatcattttgagtaatatgtatcataccagtatagtattaagtatagttttaggattatt |
210 |
Q |
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| T |
11379055 |
aaatcaatgtatcccaacatctgtatcaccattaatccattatcattttaaataacatgtatcataccagtattgtattaagtttagtgtta-gattatt |
11378957 |
T |
|
| Q |
211 |
agtcatcaagtgaacactctaataggctcttcatttttgttgttaattgaagtgactatattcattgttgaagctcaaatctaatgatggggctacattt |
310 |
Q |
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| T |
11378956 |
agtcatc-agtgaaaactctgataggttcttcatttttgttgctaattaaagtgattatattcattgttgaaactcaaatctgatgatgggg-tacatct |
11378859 |
T |
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| Q |
311 |
ctcaaataat |
320 |
Q |
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| T |
11378858 |
cttaaataat |
11378849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 119; Significance: 1e-60; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 19 - 149
Target Start/End: Original strand, 2580114 - 2580244
Alignment:
| Q |
19 |
gtttatttatgtttattacttttaggacttagccattgatgtttaatggtttattatttcttagatctcgaagccattactttcatttcttgaaatcaat |
118 |
Q |
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| T |
2580114 |
gtttatttatgtttattacttttaggacttagccattgatgtttaatggtttattattacttagatctctaagccattactttcatttcttgaaatcaat |
2580213 |
T |
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| Q |
119 |
atatcccaagatctgtatcaccattaatcca |
149 |
Q |
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| T |
2580214 |
gtatcccaagatctgtatcaccattaatcca |
2580244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 284 - 360
Target Start/End: Original strand, 2580312 - 2580388
Alignment:
| Q |
284 |
ctcaaatctaatgatggggctacatttctcaaataatatgtttctaattgacatattcatatcacagtacctatgat |
360 |
Q |
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| T |
2580312 |
ctcaaatctaatgatgggggtacatttctcaaataatatgtttctaattgacatattcatatcacagtacctatgat |
2580388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 177 - 246
Target Start/End: Original strand, 2580242 - 2580311
Alignment:
| Q |
177 |
ccagtatagtattaagtatagttttaggattattagtcatcaagtgaacactctaataggctcttcattt |
246 |
Q |
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| T |
2580242 |
ccagtatagtattaagtatagttttaggattattagtcatcaagtgaacactctaataggctcttcattt |
2580311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 226
Target Start/End: Original strand, 2580464 - 2580524
Alignment:
| Q |
166 |
tatgtatcataccagtatagtattaagtatagttttaggattattagtcatcaagtgaaca |
226 |
Q |
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| T |
2580464 |
tatgtatgataccagtattgtattaacttaaattttaggattatgagtcatcaaatgaaca |
2580524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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