View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3564_high_15 (Length: 349)

Name: NF3564_high_15
Description: NF3564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3564_high_15
NF3564_high_15
[»] chr1 (4 HSPs)
chr1 (1-330)||(25424218-25424547)
chr1 (62-105)||(29682219-29682262)
chr1 (77-149)||(22657036-22657104)
chr1 (174-270)||(29682257-29682356)
[»] chr8 (1 HSPs)
chr8 (62-328)||(24031695-24031954)
[»] chr2 (1 HSPs)
chr2 (62-328)||(22805134-22805394)
[»] chr7 (3 HSPs)
chr7 (62-328)||(20070084-20070343)
chr7 (174-270)||(47142798-47142897)
chr7 (62-105)||(47142760-47142803)
[»] chr5 (1 HSPs)
chr5 (62-215)||(22304499-22304644)
[»] chr3 (1 HSPs)
chr3 (62-219)||(30741596-30741745)
[»] chr4 (2 HSPs)
chr4 (62-219)||(30142965-30143113)
chr4 (62-219)||(19802927-19803076)


Alignment Details
Target: chr1 (Bit Score: 291; Significance: 1e-163; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 330
Target Start/End: Original strand, 25424218 - 25424547
Alignment:
Q  1 atgagcattttgatttgtcatcaactctcttactttatggttcaaaaaagttttcatacaatgatcgttgtcgtgcacgatcaaaaataagtattttaaa 100  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  25424218 atgagcattttgatttgtcatcaactctcttactttctggttcaaaaaagttttcatacaatgatcattgtcgtgcacgatcaaaaataagtattttaaa 25424317  T
Q  101 acaagtagtgcaaggtagttagttaaccttggtcgtctctcgaagattttttatttaacaattgcgcgccaataacaagaacatcagctatgaattcaaa 200  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||    
T  25424318 acaagtagtacaaggtagttagttaaccttggtcgtctctcgaagatttttgatttaacaattgcgcgccaataacaagaacatcagctacgaattcaaa 25424417  T
Q  201 agtataaattggggg-ttttgtttgcttcacggaacaatttgcaatttaagagagattcagttaataaaaagcaatcaatccattggttttaggcatact 299  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  25424418 agtataaattgggggtttttgtttgcttcacggaacaatttgcaatttaagagagattcagtt-ataaaaagcaatcaatccattggttttaggcatact 25424516  T
Q  300 atgtttattctttctatcatgggttcttgct 330  Q
    | |||||||||||||||||||||||||||||    
T  25424517 acgtttattctttctatcatgggttcttgct 25424547  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 62 - 105
Target Start/End: Original strand, 29682219 - 29682262
Alignment:
Q  62 tgatcgttgtcgtgcacgatcaaaaataagtattttaaaacaag 105  Q
    ||||||||||||| | ||||||||||||||||||||||||||||    
T  29682219 tgatcgttgtcgtacgcgatcaaaaataagtattttaaaacaag 29682262  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 77 - 149
Target Start/End: Complemental strand, 22657104 - 22657036
Alignment:
Q  77 acgatcaaaaataagtattttaaaacaagtagtgcaaggtagttagttaaccttggtcgtctctcgaagattt 149  Q
    ||||| ||| ||||||||||||||||||||||  |||||||    |||||||||||||| ||||| |||||||    
T  22657104 acgataaaagataagtattttaaaacaagtagcacaaggta----gttaaccttggtcgactctcaaagattt 22657036  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 270
Target Start/End: Original strand, 29682257 - 29682356
Alignment:
Q  174 aacaagaacatcagctatgaattcaaaagtataaattggg---ggttttgtttgcttcacggaacaatttgcaatttaagagagattcagttaataaaaa 270  Q
    ||||||||||  | ||| |||||||||| |||||||||||   | |||||||||| ||||  |||||||| ||| |||| ||||||||| |||| |||||    
T  29682257 aacaagaacagaaactacgaattcaaaaatataaattggggctgtttttgtttgcctcacaaaacaattttcaaattaaaagagattcaattaaaaaaaa 29682356  T

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Target: chr8 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 62 - 328
Target Start/End: Complemental strand, 24031954 - 24031695
Alignment:
Q  62 tgatcgttgtcgtgcacgatcaaaaataagtattttaaaacaagtagtgcaaggtagttagttaaccttggtcgtctctcgaagattttttatttaacaa 161  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||    ||||||||||||| |||||||| |||||||||||||||||    
T  24031954 tgatcgttgtcgtgcacgatcaaaaataagtattttaaaacaagtagtacaaggta----gttaaccttggtcttctctcgaggattttttatttaacaa 24031859  T
Q  162 ttgcgcgccaataacaagaacatcagctatgaattcaaaagtataaatt-gggggttttgtttgcttcacggaacaatttgcaatttaagagagattcag 260  Q
    ||     ||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||| |||||| ||| |||| |||||     
T  24031858 tt----accaataacaagaacagcagctatgaattcaaaaatataaattggggggttttgtttgcttcacggaacaacttgcaaattaggagaaattcaa 24031763  T
Q  261 ttaataaaaagcaatcaatccattggttttaggcatactatgtttattctttctatcatgggttcttg 328  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||    
T  24031762 ttaataaaaagcaatcaatccattggttttaggcatactacgtttattccttctatcatgggttcttg 24031695  T

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Target: chr2 (Bit Score: 148; Significance: 5e-78; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 62 - 328
Target Start/End: Original strand, 22805134 - 22805394
Alignment:
Q  62 tgatcgttgtcgtgcacgatcaaaaataagtattttaaaacaagtagtgcaaggtagttagttaaccttggtcgtctctcgaagattttttatttaacaa 161  Q
    |||||||||| |||||||||||||  |||||||||||||||||||||| |||||    ||||||| |||||||||||||||| ||||||| |||||||||    
T  22805134 tgatcgttgttgtgcacgatcaaatttaagtattttaaaacaagtagtacaagg----tagttaaacttggtcgtctctcgaggatttttgatttaacaa 22805229  T
Q  162 ttgcgcgccaataacaagaacatcagctatgaattcaaaagtataaatt--gggggttttgtttgcttcacggaacaatttgcaatttaagagagattca 259  Q
    ||     ||||||| ||||||| ||||||||||||||||| ||||||||  ||||||||||||||||||||||||||| |||||| ||| |||| |||||    
T  22805230 tt----accaataagaagaacagcagctatgaattcaaaaatataaattgggggggttttgtttgcttcacggaacaacttgcaaattaggagaaattca 22805325  T
Q  260 gttaataaaaagcaatcaatccattggttttaggcatactatgtttattctttctatcatgggttcttg 328  Q
     |||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||    
T  22805326 attaataaaaagcaatcaatccattggttttaggcatactacgtttattccttctatcacgggttcttg 22805394  T

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Target: chr7 (Bit Score: 110; Significance: 2e-55; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 62 - 328
Target Start/End: Original strand, 20070084 - 20070343
Alignment:
Q  62 tgatcgttgtcgtgcacgatcaaaaataagtattttaaaacaagtagtgcaaggtagttagttaaccttggtcgtctctcgaagattttttatttaacaa 161  Q
    |||||||||||||||| |||  |||||||||||| ||||||||||| |  |||||||||     ||||| ||| || ||||||||||| | ||||| |||    
T  20070084 tgatcgttgtcgtgcatgatagaaaataagtattataaaacaagtaatagaaggtagttt----acctttgtcatccctcgaagatttctgatttaccaa 20070179  T
Q  162 ttgcgcgccaataacaagaacatcagctatgaattcaaaagtataaattgggggtttt-gtttgcttcacggaacaatttgcaatttaagagagattcag 260  Q
    || |    |||||||| ||||| || ||| |||||||||| ||||||||||||||||| |||| ||| | ||||||| |||||| |||||||||||| ||    
T  20070180 ttac----caataacatgaacaacaactacgaattcaaaaatataaattgggggtttttgttttctttatggaacaagttgcaaattaagagagattaag 20070275  T
Q  261 ttaataaaaagcaatcaatccattggttttaggcatactatgtttattctttctatcatgggttcttg 328  Q
    ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |||||||    
T  20070276 ttaataaaaagcaatcaatccattgattttaggcatactacgtttattctttctatcatgagttcttg 20070343  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 174 - 270
Target Start/End: Original strand, 47142798 - 47142897
Alignment:
Q  174 aacaagaacatcagctatgaattcaaaagtataaattgggg--gttt-tgtttgcttcacggaacaatttgcaatttaagagagattcagttaataaaaa 270  Q
    ||||||||||  | ||| |||||||||| ||||||||||||  |||| ||||||| || | ||||||||||||| ||||||||||||||||||| |||||    
T  47142798 aacaagaacagaaactacgaattcaaaaatataaattggggcggtttctgtttgcctcgcagaacaatttgcaaattaagagagattcagttaaaaaaaa 47142897  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 62 - 105
Target Start/End: Original strand, 47142760 - 47142803
Alignment:
Q  62 tgatcgttgtcgtgcacgatcaaaaataagtattttaaaacaag 105  Q
    ||||||||||||| | ||||||||||||||||||| ||||||||    
T  47142760 tgatcgttgtcgtacgcgatcaaaaataagtatttgaaaacaag 47142803  T

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Target: chr5 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 62 - 215
Target Start/End: Complemental strand, 22304644 - 22304499
Alignment:
Q  62 tgatcgttgtcgtgcacgatcaaaaataagtattttaaaacaagtagtgcaaggtagttagttaaccttggtcgtctctcgaagattttttatttaacaa 161  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||    |||||||||||| ||||||||| ||||| | ||||| |||    
T  22304644 tgatcgttgtcgtggacgatcaaaaataagtattttaaaacaagtagtacaaggta----gttaaccttggttgtctctcgaggatttctgatttagcaa 22304549  T
Q  162 ttgcgcgccaataacaagaacatcagctatgaattcaaaagtataaattggggg 215  Q
    ||     ||||||||||||||| || |||||||||||||| ||||||| |||||    
T  22304548 tt----accaataacaagaacaacaactatgaattcaaaaatataaatcggggg 22304499  T

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Target: chr3 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 62 - 219
Target Start/End: Original strand, 30741596 - 30741745
Alignment:
Q  62 tgatcgttgtcgtgcacgatcaaaaataagtattttaaaacaagtagtgcaaggtagttagttaaccttggtcgtctctcgaagattttttatttaacaa 161  Q
    |||||||||||||| |||||||||  |||||||||||||||||||||| |||||    |||||||||||||| ||||||||| ||||| | ||||| |||    
T  30741596 tgatcgttgtcgtggacgatcaaatttaagtattttaaaacaagtagtacaagg----tagttaaccttggttgtctctcgaggatttctgatttagcaa 30741691  T
Q  162 ttgcgcgccaataacaagaacatcagctatgaattcaaaagtataaattgggggtttt 219  Q
    ||     ||||||||||||||| || |||||||||||||| ||||||| |||||||||    
T  30741692 tt----accaataacaagaacaacaactatgaattcaaaaatataaatcgggggtttt 30741745  T

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Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 62 - 219
Target Start/End: Complemental strand, 30143113 - 30142965
Alignment:
Q  62 tgatcgttgtcgtgcacgatcaaaaataagtattttaaaacaagtagtgcaaggtagttagttaaccttggtcgtctctcgaagattttttatttaacaa 161  Q
    |||||| ||||||| ||||| |||||||| |||||||||||||||||| |||||||    |||||||||||||||||||||| ||||| | ||||| |||    
T  30143113 tgatcgatgtcgtggacgataaaaaataaatattttaaaacaagtagtacaaggta----gttaaccttggtcgtctctcgaggatttctgatttagcaa 30143018  T
Q  162 ttgcgcgccaataacaagaacatcagctatgaattcaaaagtataaattgggggtttt 219  Q
    ||      |||||||||||||| || |||||||||||||| |||||||||| ||||||    
T  30143017 tt-----acaataacaagaacaacaactatgaattcaaaaatataaattggaggtttt 30142965  T

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Target: chr4; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 62 - 219
Target Start/End: Complemental strand, 19803076 - 19802927
Alignment:
Q  62 tgatcgttgtcgtgcacgatcaaaaataagtattttaaaacaagtagtgcaaggtagttagttaaccttggtcgtctctcgaagattttttatttaacaa 161  Q
    |||||||||||||| ||||| |||||||| ||||||||||||||||||  ||||    ||||||||||||||| |||||||| ||||| | ||||| |||    
T  19803076 tgatcgttgtcgtggacgattaaaaataaatattttaaaacaagtagtagaagg----tagttaaccttggtcatctctcgaggatttctgatttagcaa 19802981  T
Q  162 ttgcgcgccaataacaagaacatcagctatgaattcaaaagtataaattgggggtttt 219  Q
    ||     ||||||||||||||| || |||||||||||||| ||||||| |||||||||    
T  19802980 tt----accaataacaagaacaacaactatgaattcaaaaatataaatcgggggtttt 19802927  T

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