View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3564_high_2 (Length: 611)
Name: NF3564_high_2
Description: NF3564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3564_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 532; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 532; E-Value: 0
Query Start/End: Original strand, 18 - 599
Target Start/End: Original strand, 36276732 - 36277315
Alignment:
| Q |
18 |
acaaaccaccactacctaccaataattatatgttatgtaaatacagttcaattattagctgcgtgaaggtttga--tttcttggagcaaaatctcgaata |
115 |
Q |
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| T |
36276732 |
acaaaccaccactacctaccaataattatatgttatgtaaatacaattcaattagtagctgcgtgaaggtttgagatttcttggagcaaaatctcgaata |
36276831 |
T |
|
| Q |
116 |
tttcctgtcacttcttcacactatcgtcattaaacatttgaccagaaaaaagtaacatttttattatgtcaaatttattgtcatgcattttctattttgc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36276832 |
tttcctgtcacttcttcacactatcgtcattaaacatttgaccagaaaaaagtaacatttttattatgtcaaatttattgtcatgcattttctattttgc |
36276931 |
T |
|
| Q |
216 |
attaggtagctggttttccacttggaacaagaacataaaactagattaattgccacgaacaacttggttacaaactaggacaaaaaccaaactataagag |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36276932 |
attaggtagctggttttccacttggaacaagaacataaaactagattaattgccacgaacaacttggttacaaactaggacaaaaaccaaactataagag |
36277031 |
T |
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| Q |
316 |
cacgattatgaaagcaagactgcaactttgaagaaagtgtccccctccaaaaaacacccttaatagctaaacttattttgtgcaactttagctataaata |
415 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
36277032 |
cacaattatgaaagcaagactgcaactttgaagaaagtgtccccctccaaaaaacaccctaaatagctaaacttattttgtgcaactttagctataaata |
36277131 |
T |
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| Q |
416 |
gcattagcacgtacaatcacttttagtttatggttttaatcaatttcaacgtcttctggcagctgtttctctttgtgcattgnnnnnnncagcagccaca |
515 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
36277132 |
gcattagcacgtacaatcacttttagtttatggttttaatcaatttcaacgtcttctggcagctgtttctctttgtgcattgaaaaaaacagcagccaca |
36277231 |
T |
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| Q |
516 |
ggaggcccgaggtcattgtcttgtgcaaatttccttgtgttaaagagatctcttgatgttggtattttcatcactgtctgtctg |
599 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36277232 |
ggaggcccgaggtcattgtcttgtgcaaatttctttgtgttaaagagatctcttgatgttggtattttcatcactgtctgtctg |
36277315 |
T |
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