View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3564_high_20 (Length: 337)
Name: NF3564_high_20
Description: NF3564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3564_high_20 |
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| [»] scaffold0636 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 17 - 327
Target Start/End: Complemental strand, 33138045 - 33137735
Alignment:
| Q |
17 |
agttggagcaccttagttcttnnnnnnnntattttgtactttgaagaaatcccaacacaagtatctaaacatgaagattgaagtttttcgcattccacca |
116 |
Q |
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| T |
33138045 |
agttggagcaccttagttcttaaaaaaaatattttgtactttaaagaaatcccaacacaagtatctaaacatga-gattgaagtttttcgtatcccacca |
33137947 |
T |
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| Q |
117 |
taactgttctatatataagcaccaatgcaggacaaaatatgtttactataaatgaattttaatatagagatgcaaaactctcaagttatgttataaagaa |
216 |
Q |
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| T |
33137946 |
taattgttctatatataagcaccaatgcaaaacaaaatatgtttactataaatgaattttaatatagagatgcaaaactctccagttatgttataaagaa |
33137847 |
T |
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| Q |
217 |
cactcaaagaaacttgtaagaaaccaaaacatataagaatcatc-ttgatcttatgtttaattaagtttgttatcattaaaacattaactcataagaatt |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
33137846 |
cactcaaagaaacttgtaagaaaccaaaacatataagaaccatctttgatcttatgtttaattaagtttgttatcattaaaacattaactcataaggatt |
33137747 |
T |
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| Q |
316 |
tttgtgatattc |
327 |
Q |
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| T |
33137746 |
tttgtgatattc |
33137735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 46 - 194
Target Start/End: Complemental strand, 33143630 - 33143483
Alignment:
| Q |
46 |
tattttgtactttgaagaaatcccaacacaagtatctaaacatgaagattgaagtttttcgcattccaccataactgttctatatataagcaccaatgca |
145 |
Q |
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| T |
33143630 |
tattttgtactttaaggaaattccaccacaaatatctaaatatga-gattgaagtttttcttattacatcataatttttctatatataagtatcaatgcg |
33143532 |
T |
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| Q |
146 |
ggacaaaatatgtttactataaatgaattttaatatagagatgcaaaac |
194 |
Q |
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| T |
33143531 |
agacaaaatatatttactataaataaattttaatatagagatgcaaaac |
33143483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 210 - 305
Target Start/End: Original strand, 16174104 - 16174200
Alignment:
| Q |
210 |
taaagaacactcaaagaaacttgtaagaaaccaaaacatataagaatcatcttgatc-ttatgtttaattaagtttgttatcattaaaacattaact |
305 |
Q |
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| T |
16174104 |
taaagaacactcaaagaaacttgttagaaatcaacacatatcataatcattttgatctttatgttcaattaagttttttatcattaaaacatcaact |
16174200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 211 - 305
Target Start/End: Original strand, 34483445 - 34483540
Alignment:
| Q |
211 |
aaagaacactcaaagaaacttgtaagaaaccaaaacatataagaatcatcttgatct-tatgtttaattaagtttgttatcattaaaacattaact |
305 |
Q |
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||||||||||||||||||||||| ||||| || | |||| |||||||| || || | |||||| ||||||||||||| |||||||||||| |||| |
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| T |
34483445 |
aaagaacactcaaagaaacttgttagaaaataacatatattagaatcattttcatgtctatgttcaattaagtttgttgtcattaaaacatcaact |
34483540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0636 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0636
Description:
Target: scaffold0636; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 300
Target Start/End: Complemental strand, 6450 - 6354
Alignment:
| Q |
205 |
tgttataaagaacactcaaagaaacttgtaagaaaccaaaacatataagaatcatcttgatct-tatgtttaattaagtttgttatcattaaaacat |
300 |
Q |
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|||| |||| |||||||||| |||||||| ||||||||| |||||| | ||||| |||| || | |||| |||| ||||||| ||||||||||||| |
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| T |
6450 |
tgttctaaataacactcaaataaacttgttagaaaccaacacatatcaaaatcaatttgacctctttgttcaattgagtttgtaatcattaaaacat |
6354 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 270 - 305
Target Start/End: Original strand, 25663588 - 25663623
Alignment:
| Q |
270 |
tgtttaattaagtttgttatcattaaaacattaact |
305 |
Q |
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| T |
25663588 |
tgtttaattaagtttgttatcattaaaacatcaact |
25663623 |
T |
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