View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3564_high_21 (Length: 314)

Name: NF3564_high_21
Description: NF3564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3564_high_21
NF3564_high_21
[»] chr5 (1 HSPs)
chr5 (1-314)||(3712546-3712859)


Alignment Details
Target: chr5 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 314
Target Start/End: Original strand, 3712546 - 3712859
Alignment:
Q  1 aaggcaaggaacaaataattatggggtaaattgcactttaaatagtacgtataatacacaataacttctgtccnnnnnnntaataaaaatagtatacaca 100  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||    
T  3712546 aaggcaagggacaaataattatggggtaaattgcactttaaatagtacgtataatacacaataacttctgtccaaaaaaataataaaaatagtatacaca 3712645  T
Q  101 acaactaacaacaatcaaaaagggtgatagaaaattatgtacctacgatcactttcttcaaagttgatgcactgctgcagctcacacaaatgtttatttc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3712646 acaactaacaacaatcaaaaagggtgatagaaaattatgtacctacgatcactttcttcaaagttgatgcactgctgcagctcacacaaatgtttatttc 3712745  T
Q  201 atcatttgtgactttctgttgcagtgctggattctcctctagcttattatcctttacacttggtttagttaacgtctccaacaatttaacattgtctaat 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| ||||    
T  3712746 atcatttgtgactttctgttgcagtgctggattctcctctagcttattatcctttacacttgatgtagttaacgtctccaacaatttaacattgtttaat 3712845  T
Q  301 tcctaaatataatc 314  Q
    ||||||||||||||    
T  3712846 tcctaaatataatc 3712859  T

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