View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3564_high_26 (Length: 281)
Name: NF3564_high_26
Description: NF3564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3564_high_26 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 11 - 266
Target Start/End: Original strand, 44247937 - 44248192
Alignment:
| Q |
11 |
cataggagaaatgtctcacttttcaatcagtgaatgattcttcccatttttcatcatctgcnnnnnnntctcattccaagtatctataggtcctggcaag |
110 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
44247937 |
catacgagaaatgtctcacttttcaatcagtgaatgattcttcccattcttcatcatctgcaaaaaaatctcattccaaatatctataggtcctggcaag |
44248036 |
T |
|
| Q |
111 |
caccaatgaacacaatcattttgtacattctttggaacccttttagcaaatggaaaaggattcatataagctcctgcatgaccatctggtctcaataatg |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44248037 |
caccaatgaacacaatcattttgtacattctttggaacccttttagcaaatggaaaaggattcatataagctcctgcatgaccatctggtctcaataatg |
44248136 |
T |
|
| Q |
211 |
ccaactttgttatatcaagcacctccaaatttaatccaatttgttgagcttttact |
266 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44248137 |
ccaactttgttatatcaagcacctccaaatttaatccaatttgttgagcttttact |
44248192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 133; Significance: 3e-69; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 79 - 263
Target Start/End: Complemental strand, 15284555 - 15284371
Alignment:
| Q |
79 |
tctcattccaagtatctataggtcctggcaagcaccaatgaacacaatcattttgtacattctttggaacccttttagcaaatggaaaaggattcatata |
178 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | || ||||||||||||||||||||||| |
|
|
| T |
15284555 |
tctcattccaagtatctataggtcctggcaagcaccaatgaacacaatcattttgtacatattttggaactccatttgcaaatggaaaaggattcatata |
15284456 |
T |
|
| Q |
179 |
agctcctgcatgaccatctggtctcaataatgccaactttgttatatcaagcacctccaaatttaatccaatttgttgagctttt |
263 |
Q |
| |
|
||| || |||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||| ||||| ||||||| |
|
|
| T |
15284455 |
agcaccagcatgaccatctggtctcaacaatgccaattttgttatatcaagcacctctaaatttaatccaaattgtttagctttt |
15284371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 79 - 235
Target Start/End: Original strand, 15287360 - 15287516
Alignment:
| Q |
79 |
tctcattccaagtatctataggtcctggcaagcaccaatgaacacaatcattttgtacattctttggaacccttttagcaaatggaaaaggattcatata |
178 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | || |||||||||||||||||||| || |
|
|
| T |
15287360 |
tctcattccaagtatctataggtcctggcaagcaccaatgaacacaatcattttgtacatattttggaactccatttgcaaatggaaaaggattcatgta |
15287459 |
T |
|
| Q |
179 |
agctcctgcatgaccatctggtctcaataatgccaactttgttatatcaagcacctc |
235 |
Q |
| |
|
|| |||| ||||||||||||||||||||||||||| || |||| ||| | |||||| |
|
|
| T |
15287460 |
aggacctggatgaccatctggtctcaataatgccaatttagttacatccaacacctc |
15287516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 79 - 214
Target Start/End: Complemental strand, 15263066 - 15262931
Alignment:
| Q |
79 |
tctcattccaagtatctataggtcctggcaagcaccaatgaacacaatcattttgtacattctttggaacccttttagcaaatggaaaaggattcatata |
178 |
Q |
| |
|
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||| ||||||||| | || || || |||||||||||||| || |
|
|
| T |
15263066 |
tctcattccaagtatctataggtccaggcaaacaccaatgaacacaatcattttgcacatactttggaacaccgttcgcgaacggaaaaggattcatgta |
15262967 |
T |
|
| Q |
179 |
agctcctgcatgaccatctggtctcaataatgccaa |
214 |
Q |
| |
|
||| |||| |||||||||||||||||| |||||||| |
|
|
| T |
15262966 |
agcacctggatgaccatctggtctcaacaatgccaa |
15262931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 79 - 229
Target Start/End: Original strand, 15256689 - 15256839
Alignment:
| Q |
79 |
tctcattccaagtatctataggtcctggcaagcaccaatgaacacaatcattttgtacattctttggaacccttttagcaaatggaaaaggattcatata |
178 |
Q |
| |
|
|||||||||| || ||||||||||| ||||| |||||||||||||||||||| || ||| | |||||| | || |||||||||||||| | |||||| |
|
|
| T |
15256689 |
tctcattccatgtgtctataggtccaggcaaacaccaatgaacacaatcattctgcacacgttctggaacaccattggcaaatggaaaagggtacatata |
15256788 |
T |
|
| Q |
179 |
agctcctgcatgaccatctggtctcaataatgccaactttgttatatcaag |
229 |
Q |
| |
|
|| |||| |||||||||||||||||| |||||||| || |||| |||||| |
|
|
| T |
15256789 |
aggacctggatgaccatctggtctcaacaatgccaatttagttacatcaag |
15256839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 79 - 222
Target Start/End: Original strand, 15265214 - 15265357
Alignment:
| Q |
79 |
tctcattccaagtatctataggtcctggcaagcaccaatgaacacaatcattttgtacattctttggaacccttttagcaaatggaaaaggattcatata |
178 |
Q |
| |
|
|||||||||| ||||| || ||||| ||||| ||||||||||||||||||||||| |||| | | |||||| ||| |||||||||||||||||||| |
|
|
| T |
15265214 |
tctcattccatgtatcaattggtccaggcaaacaccaatgaacacaatcattttgcacatgttcttgaaccccattaaagaatggaaaaggattcatata |
15265313 |
T |
|
| Q |
179 |
agctcctgcatgaccatctggtctcaataatgccaactttgtta |
222 |
Q |
| |
|
|| |||| ||||||||||||||| || || ||||| ||||||| |
|
|
| T |
15265314 |
aggacctggatgaccatctggtcttaacaaagccaattttgtta |
15265357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 79 - 255
Target Start/End: Original strand, 11806923 - 11807099
Alignment:
| Q |
79 |
tctcattccaagtatctataggtcctggcaagcaccaatgaacacaatcattttgtacattctttggaacccttttagcaaatggaaaaggattcatata |
178 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||||||||||||| | |||| |
|
|
| T |
11806923 |
tctcattccaagtatcaataggtcctggcaagcaccaatgagtacaatcgttttgtacattctttggaattgttttagcaaatggaaaaggatacctata |
11807022 |
T |
|
| Q |
179 |
agctcctgcatgaccatctggtctcaataatgccaactttgttatatcaagcacctccaaatttaatccaatttgtt |
255 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
11807023 |
agctcctgcatgaccatctggtctcaacaatgccaattttgttatatcaagcaccttcaaatttaatccaacttgtt |
11807099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 79 - 263
Target Start/End: Complemental strand, 51383740 - 51383556
Alignment:
| Q |
79 |
tctcattccaagtatctataggtcctggcaagcaccaatgaacacaatcattttgtacattctttggaacccttttagcaaatggaaaaggattcatata |
178 |
Q |
| |
|
||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||| || |
|
|
| T |
51383740 |
tctcattccaagtgtctataggtcctggcaaacaccaatgaacacaatcattttgtacatactttggaattccattagcaaatggaaaaggattcatgta |
51383641 |
T |
|
| Q |
179 |
agctcctgcatgaccatctggtctcaataatgccaactttgttatatcaagcacctccaaatttaatccaatttgttgagctttt |
263 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||| | ||||| ||||||| |
|
|
| T |
51383640 |
ggctcctgcatgaccatctggtctcaacaatgccaattttgttatatcaagcacctccaaattaaatcccaattgttcagctttt |
51383556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 85 - 130
Target Start/End: Original strand, 6554179 - 6554224
Alignment:
| Q |
85 |
tccaagtatctataggtcctggcaagcaccaatgaacacaatcatt |
130 |
Q |
| |
|
|||| ||||||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
6554179 |
tccatgtatctataggccctggcaaacaccaatgaacacaatcatt |
6554224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University