View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3564_high_28 (Length: 264)
Name: NF3564_high_28
Description: NF3564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3564_high_28 |
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Alignment Details
Target: chr7 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 39469690 - 39469443
Alignment:
| Q |
1 |
gcttctgaacttcatgggaaaccagttatctggttttgttccttctggacttggaaatttgcctcaattggaggtttttgagctatggaacaattcatta |
100 |
Q |
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| T |
39469690 |
gcttctgaacttcatgggaaaccagttatctggttttgttccttctggacttggaaatttgcctcaattggaggtttttgagctatggaacaattcatta |
39469591 |
T |
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| Q |
101 |
tcaggtccattgcctagtaacctcggcaagaattcaccattgcaatggttggatgtatcatccaattcactctctggagagattccagaaactctttgca |
200 |
Q |
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| T |
39469590 |
tcaggtccattgcctagtaacctcggcgagaattcaccattgcaatggttggatgtatcatccaattcactctctggagagattccagaaactctttgca |
39469491 |
T |
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| Q |
201 |
gcaagggcaatcttaccaagctaatacttttcaacaatgctttctctg |
248 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39469490 |
gcaagggcaatcttaccaagctaatacttttcaacaatgctttctctg |
39469443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 30088261 - 30088500
Alignment:
| Q |
1 |
gcttctgaacttcatgggaaaccagttatctggttttgttccttctggacttggaaatttgcctcaattggaggtttttgagctatggaacaattcatta |
100 |
Q |
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|||||||||||| ||| | ||| || |||||||| ||| |||||||| |||||| ||||||||||| | ||||| ||||||||||||||||||| || |
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| T |
30088261 |
gcttctgaactttatgaggaacaagctatctggtcctgtaccttctggccttggagatttgcctcaactagaggtgcttgagctatggaacaattctttg |
30088360 |
T |
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| Q |
101 |
tcaggtccattgcctagtaacctcggcaagaattcaccattgcaatggttggatgtatcatccaattcactctctggagagattccagaaactctttgca |
200 |
Q |
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||||| ||||||||||| |||||||||||||||| || |||| |||||||||||||| |||||||||||||| || |||||||| ||||||||||||| |
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| T |
30088361 |
tcagggccattgcctagagacctcggcaagaattcgccgctgcagtggttggatgtatcgtccaattcactctccggcgagattcctgaaactctttgca |
30088460 |
T |
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| Q |
201 |
gcaagggcaatcttaccaagctaatacttttcaacaatgc |
240 |
Q |
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||||| ||||| |||||||| ||||||||||||||||| |
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| T |
30088461 |
ctaagggaaatctcaccaagcttatacttttcaacaatgc |
30088500 |
T |
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