View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3564_high_3 (Length: 536)
Name: NF3564_high_3
Description: NF3564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3564_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 351; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 165 - 527
Target Start/End: Original strand, 2150905 - 2151267
Alignment:
| Q |
165 |
ggtggtgcccacacatgaaacactttatttaacatttttatgaataactgcacgaggagtcctttactcgatcagatttttggacatagaatattgtttt |
264 |
Q |
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| T |
2150905 |
ggtggtgcccacacatgaaacactttatttaacatttttatgaataactgcacgaggagtcctttactcgataagatttttggacatagaatattgtttt |
2151004 |
T |
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| Q |
265 |
aaaatcagaaatttagacttacttgtgtggctttgaatatgtagacaaaagaatttctcttcataagcaataactctctgctagcacaagcccttagcag |
364 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2151005 |
aaaatcagaaatttagactcacttgtgtggctttgaatatgtagacaaaagaatttctcttcataagcaataactctctgctagcacaagcccttagcag |
2151104 |
T |
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| Q |
365 |
ctccttcttgttaatcccatatttctttgtgatcaagacatttgaatgaaatttagacttgtcaaatggatcggccagctcttctccaagttgtttgcct |
464 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2151105 |
ctccttcttgttaatcccatatttctttgtgatcaagacatttgaatgaaatttagacttgtcaaatggatcggccagctcttctccaagttgtttgcct |
2151204 |
T |
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| Q |
465 |
acgtgaaataattcgaaggctcgagcaaaatccttgacagtgacaaagttataaggttcatct |
527 |
Q |
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| T |
2151205 |
atgtgaaataattcgaaggctcgagcaaaatccttgacagtgacaaagttataaggttcatct |
2151267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 17 - 116
Target Start/End: Original strand, 2150753 - 2150852
Alignment:
| Q |
17 |
acatcttggttcgtagaaataacgtcgtcgtcaaggtagctaaataagtaagctgagaagcatgaaagacaacttgcttaatgtcacaaaaagtaaagat |
116 |
Q |
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| T |
2150753 |
acatcttggttcgcagaaataacgtcgtcgtcaaggtagctaaataagtaagctgagaagcatgaaagacaacttgcttaatgtcacaaaaagtaaagat |
2150852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 285 - 527
Target Start/End: Original strand, 2163303 - 2163545
Alignment:
| Q |
285 |
acttgtgtggctttgaatatgtagacaaaagaatttctcttcataagcaataactctctgctagcacaagcccttagcagctccttcttgttaatcccat |
384 |
Q |
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||||| ||| ||||||| |||| |||||| ||||||| |||||||||||| || |||||||||||||||||| | || |||||||||||||||| || | |
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| T |
2163303 |
acttgagtgactttgaaaatgtggacaaacgaatttcgcttcataagcaaaaattctctgctagcacaagccttcagaagctccttcttgttaacaccgt |
2163402 |
T |
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| Q |
385 |
atttctttgtgatcaagacatttgaatgaaatttagacttgtcaaatggatcggccagctcttctccaagttgtttgcctacgtgaaataattcgaaggc |
484 |
Q |
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| T |
2163403 |
atttctttgtggtcaagacacttgcatggcatttcgacttgtcaaaaggattggctagctcatctccaagtttttgacctatgtgaaatatctgaaatgc |
2163502 |
T |
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| Q |
485 |
tcgagcaaaatccttgacagtgacaaagttataaggttcatct |
527 |
Q |
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| T |
2163503 |
ttcggcaaaatccttgacagtaacaaaactataaggttcatct |
2163545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 9e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 323 - 456
Target Start/End: Complemental strand, 4302604 - 4302471
Alignment:
| Q |
323 |
cttcataagcaataactctctgctagcacaagcccttagcagctccttcttgttaatcccatatttctttgtgatcaagacatttgaatgaaatttagac |
422 |
Q |
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|||||||||||| || ||| | |||||||||||| | || ||||| |||||||||| ||||||||||||||| |||||||||||| ||| ||||||| |
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| T |
4302604 |
cttcataagcaaaaattctatactagcacaagccttcagaagctcattcttgttaacaccatatttctttgtggtcaagacatttgcatggcatttagat |
4302505 |
T |
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| Q |
423 |
ttgtcaaatggatcggccagctcttctccaagtt |
456 |
Q |
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|| ||||| |||| ||| ||||| |||||||||| |
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| T |
4302504 |
ttttcaaaaggattggctagctcatctccaagtt |
4302471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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