View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3564_high_33 (Length: 251)
Name: NF3564_high_33
Description: NF3564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3564_high_33 |
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Alignment Details
Target: chr6 (Bit Score: 108; Significance: 2e-54; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 7 - 150
Target Start/End: Complemental strand, 1128916 - 1128773
Alignment:
| Q |
7 |
aatgtattaggttaatgtaatttgtatgtctagaattgtatctaatagactcatgtatgcttataaatgcatgaatgaatataatgatgtgataatcata |
106 |
Q |
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| T |
1128916 |
aatgtattaggttaatgtaatttgtatgcctaaaattctatctaatagactcatgtatgcttataaatgcataaatgaatataattatgtgataatcatg |
1128817 |
T |
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| Q |
107 |
ttatctttatttaagaatcatttcacatgattacatctttattt |
150 |
Q |
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| T |
1128816 |
ttatctttatttaataattatttcatatgattacatctttattt |
1128773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 42 - 151
Target Start/End: Complemental strand, 1097241 - 1097132
Alignment:
| Q |
42 |
ttgtatctaatagactcatgtatgcttataaatgcatgaatgaatataatgatgtgataatcatattatctttatttaagaatcatttcacatgattaca |
141 |
Q |
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| T |
1097241 |
ttgtatctaatagactcatgtatgcttataaatgcttgaatgaatataattatgtgataatcatgttatctttatttaataattatttcacatgattaca |
1097142 |
T |
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| Q |
142 |
tctttatttt |
151 |
Q |
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|||||||||| |
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| T |
1097141 |
tctttatttt |
1097132 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 1102893 - 1102761
Alignment:
| Q |
1 |
cacacaaatgtattaggttaatgtaatttgtatgtctagaattgtatctaatagactcatgtatgcttataaatgcatgaatgaatataatgatgtgata |
100 |
Q |
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| T |
1102893 |
cacaaaaatgtattaggttgatgtaatttgtatgcctagaattgtctctaatagactcatgtatgcttacaaatgcat----gaatataattatgtgata |
1102798 |
T |
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| Q |
101 |
atcatattatctttatttaagaatcatttcacatgat |
137 |
Q |
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| T |
1102797 |
atcatgttatttttatttaataattatttcacatgat |
1102761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 11 - 120
Target Start/End: Complemental strand, 1087280 - 1087175
Alignment:
| Q |
11 |
tattaggttaatgtaatttgtatgtctagaattgtatctaatagactcatgtatgcttataaatgcatgaatgaatataatgatgtgataatcatattat |
110 |
Q |
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| T |
1087280 |
tattaggttaatgtaatttgtatgcctagaattgtatctaacagactcatgtatgcttataaatgc----attaatataattatgtgataatcatattat |
1087185 |
T |
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| Q |
111 |
ctttatttaa |
120 |
Q |
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| T |
1087184 |
ctttatttaa |
1087175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 1118330 - 1118267
Alignment:
| Q |
1 |
cacacaaatgtattaggttaatgtaatttgtatgtctagaattgtatctaatagactcatgtat |
64 |
Q |
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| T |
1118330 |
cacaaaaatgtattaggttaatgtaatttgtatgcctagaattgtatctagtagactcatgtat |
1118267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 53 - 105
Target Start/End: Complemental strand, 1118251 - 1118199
Alignment:
| Q |
53 |
agactcatgtatgcttataaatgcatgaatgaatataatgatgtgataatcat |
105 |
Q |
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| T |
1118251 |
agactcatgtatgcttataaatgcatgaatgaatataattatgtgataatcat |
1118199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 1097268 - 1097236
Alignment:
| Q |
1 |
cacacaaatgtattaggttaatgtaatttgtat |
33 |
Q |
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|||| |||||||||||||||||||||||||||| |
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| T |
1097268 |
cacaaaaatgtattaggttaatgtaatttgtat |
1097236 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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