View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3564_high_34 (Length: 250)
Name: NF3564_high_34
Description: NF3564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3564_high_34 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 16 - 250
Target Start/End: Complemental strand, 55289600 - 55289366
Alignment:
| Q |
16 |
atacaccgacaaaatacaattctacctctacactttctaggttggtattctattgcgttacttgctgtctcacaaattgattgagtaaactaccaatttc |
115 |
Q |
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| T |
55289600 |
atacaccgacaaaatacaattctacctctacactttctaggttggtattctattgggttacttgctgtctcacaaattgattgagtaaactaccaatttc |
55289501 |
T |
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| Q |
116 |
gaccctctgaaattggtcttaaaattatgaatattttcaagaagcctttattgatagtaaattcttaattataacaaccaacttcatagtctaatacaat |
215 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55289500 |
gaccctctgaaattggtcttaaaattatgaatcttttcaagaagcctttattgatagtaaattcttaattataacaaccaacttcatagtctaatacaat |
55289401 |
T |
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| Q |
216 |
gaccttttttgaaatattcataacatcaaagatct |
250 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
55289400 |
gaccttttttgaaatattcataacatcaaagatct |
55289366 |
T |
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