View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3564_high_38 (Length: 238)
Name: NF3564_high_38
Description: NF3564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3564_high_38 |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 55289044 - 55288824
Alignment:
| Q |
1 |
tcatcggtcatctttcgactttacaatgaccattcataagttgatctcaatccagagcaagacttgtgaccatacaagccttggtcctaaatccaataat |
100 |
Q |
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| T |
55289044 |
tcatcggtcatctttcgactttacaatgaccattcataagttgatctcaatccagagcaagacttgtgaccatacaagccttggtcctaaatccaataat |
55288945 |
T |
|
| Q |
101 |
gcattgcttgagaaattccgccacaactaacaatgtgttcggaaccacagtgggatgagggcacgaggctaggcacaaactttaaagttactattcttag |
200 |
Q |
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| T |
55288944 |
gcattgcttgagaacttccgccacaactaacaatgtgttcggaaccacagtgggatgagggcacgaggctaggcacacactttaaagttactattcttag |
55288845 |
T |
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| Q |
201 |
cttcttgttttcacggcaaat |
221 |
Q |
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|||||||||||||||| |||| |
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| T |
55288844 |
cttcttgttttcacggaaaat |
55288824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 221
Target Start/End: Original strand, 51072688 - 51072728
Alignment:
| Q |
181 |
tttaaagttactattcttagcttcttgttttcacggcaaat |
221 |
Q |
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||||||| ||| |||||||||||||||||||||||| |||| |
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| T |
51072688 |
tttaaagctacaattcttagcttcttgttttcacggaaaat |
51072728 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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