View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3564_high_40 (Length: 235)
Name: NF3564_high_40
Description: NF3564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3564_high_40 |
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Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 39091272 - 39091053
Alignment:
| Q |
1 |
ccatcttttgaaccaacgtttttaatatcaatgtcaagtctaattgaaagcttgccacatcgtgcatgtgtcactctaattgctgctttgtttgagctgt |
100 |
Q |
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| T |
39091272 |
ccatcttttgaaccaacgtttttaacatcaatgtcaagtctaattgaaagcttgccacatcgtgcatgtgtcactctaattgctgctttgtttgagctgt |
39091173 |
T |
|
| Q |
101 |
ttccacgccggtgtccgtctaccggaactgacaccacttttggtgcactagctaatgtgtgaacaaagtttgtgtaagataatccgtaaccaaatggata |
200 |
Q |
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| T |
39091172 |
ttccacggcggtgtccgtctactggaactgacaccacttttggtgcactagctaatgtgtgaacaaagtttgtgtaagataatccgtaaccaaatggata |
39091073 |
T |
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| Q |
201 |
taccacagggccgttgtaaa |
220 |
Q |
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|||||||||||||||||||| |
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| T |
39091072 |
taccacagggccgttgtaaa |
39091053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 203
Target Start/End: Original strand, 44714537 - 44714704
Alignment:
| Q |
42 |
aattgaaagcttgccacatcgtgcatgtgtcactctaattgct--gctt----tgtttgagctgtttccacgccggtgtccgtctaccggaactgacacc |
135 |
Q |
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| T |
44714537 |
aattgagagtttgccacatcttgcatgtgtcactctaattgctttgtttgaaatgtttgtgttgttgccatgtcggtgaccatggactggaactgacacc |
44714636 |
T |
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| Q |
136 |
acttttggtgcactagctaatgtgtgaacaaagtttgtgtaagataatccgtaaccaaatggatatac |
203 |
Q |
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| T |
44714637 |
actgtgggtgcactagataattcgtgaacaaaatgtgtgtatgttaatccatgtccaaatggatatac |
44714704 |
T |
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