View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3564_high_41 (Length: 230)
Name: NF3564_high_41
Description: NF3564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3564_high_41 |
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Alignment Details
Target: chr5 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 70 - 215
Target Start/End: Complemental strand, 3713331 - 3713186
Alignment:
| Q |
70 |
caaaacctacatttaatgcaccttctattctaacattacatataactgaacctagacattcatacaaacattgagtctttattcttgttctgcattttat |
169 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
3713331 |
caaaacctacatttaatgcaccttctattctaacattacatataactgaacctagacattcatacaaacattgagtctttattattgttctgcattttat |
3713232 |
T |
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| Q |
170 |
ctcaacatggcttcacttcctcttcttctgctcctcatcctctgtg |
215 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
3713231 |
ctcaacatggcttctcttcctcttcttctgctcctcatcctctgtg |
3713186 |
T |
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